Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_I09
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    31   1.6  
01_01_1008 - 7987936-7988628,7988923-7989102                           31   1.6  
12_02_0082 - 13372997-13373863,13373928-13374386                       29   6.5  
09_06_0323 - 22337217-22337450,22338263-22339204                       29   6.5  
01_01_1201 + 9678893-9679311,9679415-9679721                           29   6.5  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.6  
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437...    28   8.6  

>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
 Frame = +1

Query: 523 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP--XPLTGYLSA 696
           CWR  +        T  D Q    +    +KD    P + PSC L+F P   PL   L A
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLYA 342

Query: 697 F 699
           F
Sbjct: 343 F 343


>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 726 RKRHASRREKGGQVSGKRXGSEQESARGSFQGETPG 619
           R R   RR  GG+V+G+     +   RG+++GE  G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274


>12_02_0082 - 13372997-13373863,13373928-13374386
          Length = 441

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = +1

Query: 646 SCALLFRPXPLTGYLSAFLPS 708
           SCALLF P PL G     LPS
Sbjct: 164 SCALLFSPMPLDGPTLGLLPS 184


>09_06_0323 - 22337217-22337450,22338263-22339204
          Length = 391

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +1

Query: 589 GGETRQDYKDTRRFPLEAPSCALLFRPXPLTGYLSAFLPSGSVALSHSSRCRY 747
           GGE  ++    RRF   AP  ALL R   L    ++     + A++HS+RCR+
Sbjct: 166 GGEAAREL--ARRFAA-APRRALLSRREQLRAAPASPAAMAAAAVAHSTRCRF 215


>01_01_1201 + 9678893-9679311,9679415-9679721
          Length = 241

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -2

Query: 756 RTEIPTA*AMRKRHASRREKGGQVSGKRXGSEQESAR---GSFQGETPG 619
           R E     A  + HA+RR++ G   G   G+ QESAR   G+ + + PG
Sbjct: 11  RAEAAAHRAADELHAARRDEPGGGGGGMLGTVQESARSLLGAVRDKIPG 59


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 303 NESAN---ARGEAVCVLGALPLPRSLTRCAR 386
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>04_04_1105 -
           30942735-30942791,30943116-30943466,30943670-30943762,
           30943869-30944072,30944155-30944399,30945019-30945877,
           30946070-30946936,30947113-30947562
          Length = 1041

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = +2

Query: 662 SDPXRLPDTCPPFSLREAWRFLIA-----HAVGISVRCRS 766
           ++  RL D C P  L+E WRFL+A      A   S RC++
Sbjct: 845 TEEERLAD-CDPRVLKEQWRFLVAFWNTEEAQAASARCKA 883


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,255,359
Number of Sequences: 37544
Number of extensions: 517424
Number of successful extensions: 1520
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1520
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)