Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_I07
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199...    60   2e-09
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373...    29   3.6  
11_06_0445 - 23679918-23680282,23680415-23683349                       29   3.6  
02_05_0132 - 26109152-26109852,26109962-26110358                       29   4.8  
06_01_1114 - 9179614-9180167,9180223-9180544,9181524-9181820,918...    28   8.3  
02_03_0049 + 14421408-14421942,14421988-14422842,14423847-144241...    28   8.3  

>06_01_0268 +
           1989069-1989293,1989938-1990020,1990136-1990357,
           1990434-1990621,1990711-1990835,1990988-1991039,
           1991585-1991874,1992229-1992307,1992527-1992657
          Length = 464

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 29/86 (33%), Positives = 45/86 (52%)
 Frame = +2

Query: 167 VSIVXPVTFFSVHFAIGHAATXKPQKPPAGFTHAWAVFVRGQAGVAISXFINKVVFHLHH 346
           V I  P+ + ++ F +G  A+          +H W V+VR      +S  + +VVF LH 
Sbjct: 82  VEISFPIVYGTISFWLGKKASEYN-------SHKWTVYVRSATNEDLSVIVKRVVFQLHP 134

Query: 347 TFLKPRRVVKDPPFSIKESGYAGFHL 424
           +F  P RVV+ PPF + ESG+  F +
Sbjct: 135 SFTNPTRVVEQPPFELSESGWGEFEI 160


>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
            24737484-24737549,24737629-24737799,24737901-24737999,
            24738075-24738186,24738282-24738343,24738412-24738483,
            24738583-24738681,24738764-24738997,24739104-24739178,
            24739299-24739386,24739478-24739638,24739734-24739841,
            24739934-24741922,24742007-24742279,24742957-24743295,
            24743449-24745038,24745166-24745241,24745333-24745412,
            24745614-24745679,24745761-24745830,24745899-24746134,
            24746149-24746319,24746915-24747097,24747176-24747241,
            24747326-24747389,24747472-24747530,24747612-24747699,
            24747799-24747891,24747956-24748116,24748215-24748307,
            24748405-24748518,24748654-24748773,24748852-24748935,
            24749016-24749171,24749518-24750154,24752874-24752929
          Length = 2815

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 450  KDEPKKITFSYNLTLQQNGFLKDRYIFKNPSDEFSKKLLKGGGIPCTNSE 599
            +DE KK+T   NL L+ N   ++  + K  ++E S KL K G +     E
Sbjct: 2639 EDEVKKLTRQQNLQLRINHH-EENNLLKKQNEELSAKLQKLGAVVARTKE 2687


>11_06_0445 - 23679918-23680282,23680415-23683349
          Length = 1099

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 20/68 (29%), Positives = 26/68 (38%)
 Frame = +2

Query: 239  QKPPAGFTHAWAVFVRGQAGVAISXFINKVVFHLHHTFLKPRRVVKDPPFSIKESGYAGF 418
            Q PP  F+ A  V V G    A+    N+    L H  LKP  V+ D       S +   
Sbjct: 891  QSPPKLFSLASRVRVAGDIATALDYLHNRCTPSLVHCDLKPSNVLLDDEMVACISDFGLA 950

Query: 419  HLTHRNIL 442
               H N +
Sbjct: 951  KFLHNNFI 958


>02_05_0132 - 26109152-26109852,26109962-26110358
          Length = 365

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +2

Query: 206 FAIGHAATXKPQKPPAGFTHAWAVFVRGQAGVAISXFINKVV 331
           F   H       +PP+G T AW   V G  G A   F+   V
Sbjct: 213 FGFAHVGFSAAVRPPSGATRAWGRPVMGSPGYADPHFLRSGV 254


>06_01_1114 -
           9179614-9180167,9180223-9180544,9181524-9181820,
           9181991-9182878,9182896-9182941,9182964-9183350,
           9183648-9183985
          Length = 943

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 414 PAYPDSLIENGGSLTTRRG 358
           P  PDS IEN  ++TTRRG
Sbjct: 329 PGQPDSSIENVKAITTRRG 347


>02_03_0049 +
           14421408-14421942,14421988-14422842,14423847-14424151,
           14424469-14424984
          Length = 736

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 414 PAYPDSLIENGGSLTTRRG 358
           P  PDS IEN  ++TTRRG
Sbjct: 108 PGQPDSSIENVKAITTRRG 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,027,918
Number of Sequences: 37544
Number of extensions: 311199
Number of successful extensions: 654
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)