Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_I05
         (897 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK095548-1|BAC04570.1|  153|Homo sapiens protein ( Homo sapiens ...    34   0.80 
X04947-1|CAA28610.1|  135|Homo sapiens protein ( Human mRNA for ...    32   3.2  
BC142728-1|AAI42729.1|  417|Homo sapiens SAMD14 protein protein.       31   4.3  
BC141822-1|AAI41823.1|  417|Homo sapiens SAMD14 protein protein.       31   4.3  
BC047081-1|AAH47081.1|  427|Homo sapiens SAMD14 protein protein.       31   4.3  
BC029872-1|AAH29872.1|  247|Homo sapiens SAMD14 protein protein.       31   4.3  

>AK095548-1|BAC04570.1|  153|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38229 fis, clone FCBBF2004256. ).
          Length = 153

 Score = 33.9 bits (74), Expect = 0.80
 Identities = 17/35 (48%), Positives = 18/35 (51%)
 Frame = +1

Query: 652 FPPGSSLGALSCSDPXRLPDTCPPFSLSGSVALSH 756
           FPP S L A  C         CPP SLS SV+ SH
Sbjct: 28  FPPASPLCACECPLSAHPLSLCPPVSLSSSVSPSH 62


>X04947-1|CAA28610.1|  135|Homo sapiens protein ( Human mRNA for
           T-cell receptor alpha-chain HAV01 V(a)6.1/J(a)U. ).
          Length = 135

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = -3

Query: 697 QGRNRRAHRGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAXWIXASNRGLFTVPGL 518
           Q  NRR+   +FQ       +V+S     D ++ FC +R+G G  +   +   L  +P +
Sbjct: 76  QNANRRSLLINFQKARKSANLVISASQLGDSAMYFCASREGSGNQFYFGTGTSLTVIPNI 135


>BC142728-1|AAI42729.1|  417|Homo sapiens SAMD14 protein protein.
          Length = 417

 Score = 31.5 bits (68), Expect = 4.3
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +3

Query: 507 KASKRPGTVKRPRLLAXIHXAPPP*RASQKSTLKSEVAKPDRTIKIPGVSPWKLPRCA 680
           K S   G+   P          P   ASQ+STL  +   P  + KIP   PW+  +C+
Sbjct: 246 KGSASSGSTTSPTCSPKHEGFSPKKSASQESTLSDDSTPPSSSPKIPS-GPWQEAKCS 302


>BC141822-1|AAI41823.1|  417|Homo sapiens SAMD14 protein protein.
          Length = 417

 Score = 31.5 bits (68), Expect = 4.3
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +3

Query: 507 KASKRPGTVKRPRLLAXIHXAPPP*RASQKSTLKSEVAKPDRTIKIPGVSPWKLPRCA 680
           K S   G+   P          P   ASQ+STL  +   P  + KIP   PW+  +C+
Sbjct: 246 KGSASSGSTTSPTCSPKHEGFSPKKSASQESTLSDDSTPPSSSPKIPS-GPWQEAKCS 302


>BC047081-1|AAH47081.1|  427|Homo sapiens SAMD14 protein protein.
          Length = 427

 Score = 31.5 bits (68), Expect = 4.3
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +3

Query: 507 KASKRPGTVKRPRLLAXIHXAPPP*RASQKSTLKSEVAKPDRTIKIPGVSPWKLPRCA 680
           K S   G+   P          P   ASQ+STL  +   P  + KIP   PW+  +C+
Sbjct: 256 KGSASSGSTTSPTCSPKHEGFSPKKSASQESTLSDDSTPPSSSPKIPS-GPWQEAKCS 312


>BC029872-1|AAH29872.1|  247|Homo sapiens SAMD14 protein protein.
          Length = 247

 Score = 31.5 bits (68), Expect = 4.3
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +3

Query: 507 KASKRPGTVKRPRLLAXIHXAPPP*RASQKSTLKSEVAKPDRTIKIPGVSPWKLPRCA 680
           K S   G+   P          P   ASQ+STL  +   P  + KIP   PW+  +C+
Sbjct: 76  KGSASSGSTTSPTCSPKHEGFSPKKSASQESTLSDDSTPPSSSPKIPS-GPWQEAKCS 132


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,235,695
Number of Sequences: 237096
Number of extensions: 2416566
Number of successful extensions: 11338
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11338
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11548247776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)