Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_I04
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.2  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    27   3.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   5.5  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/65 (29%), Positives = 21/65 (32%)
 Frame = +2

Query: 326 NGNQXGXXXPXXGXPPXXXXGGGKXKXXXGGXXXGXGNXXXGGGPPXXKKXXRXXGPPPX 505
           NG   G      G PP    G G      G      G+   GGGP   +      G  P 
Sbjct: 186 NGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPG 245

Query: 506 KGGGG 520
             GGG
Sbjct: 246 GFGGG 250


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 656 RXPXGPPXPPPPXKXGP 606
           + P GPP PPPP    P
Sbjct: 221 KVPRGPPSPPPPVLHSP 237


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.0 bits (47), Expect(2) = 5.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 644 GPPXPPPP 621
           GPP PPPP
Sbjct: 760 GPPPPPPP 767



 Score = 21.4 bits (43), Expect(2) = 5.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 641 PPXPPPPXKXG 609
           PP PPPP   G
Sbjct: 762 PPPPPPPGVAG 772


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,383,402
Number of Sequences: 5004
Number of extensions: 14720
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)