Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_I04
(879 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 31 0.029
05_01_0142 - 940421-940701,941262-941574 33 0.23
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 32 0.53
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 0.66
03_05_0067 - 20460206-20460703,20461255-20461530 31 1.2
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 30 2.1
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 30 2.1
07_03_1136 + 24218601-24218734,24218769-24219906 30 2.8
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 30 2.8
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 30 2.8
12_02_0640 - 21447470-21448309 29 3.7
12_02_0635 - 21430245-21431156 29 3.7
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 29 3.7
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 28 8.6
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 28 8.6
03_01_0164 - 1326002-1326409,1326410-1326428,1326523-1326647,132... 28 8.6
01_01_0082 + 625198-625719 28 8.6
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 24 9.3
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.1 bits (67), Expect(2) = 0.029
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +1
Query: 292 PPXXXPPPXXXXREPKXXGXPXXXGPPPXXXXGGK 396
PP PPP + P P PPP GGK
Sbjct: 339 PPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGK 373
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = -1
Query: 516 PPPXXGGGPXXRXXFXXXGGPPPXXWFPXPXXXPPXXXFXFPPPXXXXGG 367
PPP GP PPP P PP PPP GG
Sbjct: 336 PPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGG 385
Score = 25.0 bits (52), Expect(2) = 1.9
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +1
Query: 244 PPPXXGXXKKXNXXXXPPXXXPPPXXXXREPKXXGXPXXXGPPP 375
PPP PP PPP P P GPPP
Sbjct: 315 PPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPP---PPPAKGPPP 355
Score = 24.2 bits (50), Expect(2) = 0.029
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 493 PPPPXRGGRXXPPP 534
PPPP G + PPP
Sbjct: 366 PPPPPGGKKGGPPP 379
Score = 23.8 bits (49), Expect(2) = 1.9
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 493 PPPPXRGGRXXPPP 534
PPPP GG+ PP
Sbjct: 365 PPPPPPGGKKGGPP 378
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 33.5 bits (73), Expect = 0.23
Identities = 20/64 (31%), Positives = 24/64 (37%)
Frame = -1
Query: 519 PPPPXXGGGPXXRXXFXXXGGPPPXXWFPXPXXXPPXXXFXFPPPXXXXGGXPXXGXXXP 340
PPPP G P + PPP + P P PP + P GG P G P
Sbjct: 41 PPPP--GAYPPPPGAYP----PPPGAYPPPPGAYPPQHGYPQPGGYPPPGGYPQHGGYPP 94
Query: 339 LWFP 328
+P
Sbjct: 95 AGYP 98
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 32.3 bits (70), Expect = 0.53
Identities = 20/56 (35%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Frame = -1
Query: 516 PPPXXGGGPXXRXXFXXXGGPPP----XXWFPXPXXXPPXXXFXFPPPXXXXGGXP 361
PPP GG P G PPP P P PP F PPP G P
Sbjct: 11 PPPPQGGFPPQPPPMNPYGPPPPQQPAYGHMPPPQGAPP--PFLAPPPPPPPGPPP 64
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/50 (36%), Positives = 20/50 (40%)
Frame = -1
Query: 519 PPPPXXGGGPXXRXXFXXXGGPPPXXWFPXPXXXPPXXXFXFPPPXXXXG 370
PPPP G P + F GPP P P PP + PPP G
Sbjct: 55 PPPPPPGPPPPHQPQFNFGPGPPQQQQ-PPP---PPQMYYQPPPPPPPYG 100
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = +1
Query: 229 NRKEXPPPXXGXXKKXNXXXXPPXXXPPPXXXXREPKXXGXPXXXGPPP 375
NR PPP G K PP PPP R P PPP
Sbjct: 647 NRLVPPPPAPGIGNKF---PAPPPPPPPPRSSSRTPTGAATSSKGPPPP 692
Score = 27.5 bits (58), Expect(2) = 0.66
Identities = 13/44 (29%), Positives = 14/44 (31%)
Frame = +1
Query: 244 PPPXXGXXKKXNXXXXPPXXXPPPXXXXREPKXXGXPXXXGPPP 375
PPP K PP PPP + P PPP
Sbjct: 549 PPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPP 592
Score = 25.8 bits (54), Expect(2) = 8.8
Identities = 13/44 (29%), Positives = 13/44 (29%)
Frame = +1
Query: 244 PPPXXGXXKKXNXXXXPPXXXPPPXXXXREPKXXGXPXXXGPPP 375
PPP K PP PPP P PPP
Sbjct: 550 PPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPP 593
Score = 23.0 bits (47), Expect(2) = 0.66
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +1
Query: 493 PPPPXRGGRXXPPP 534
PPPP R PPP
Sbjct: 607 PPPPILPNRSVPPP 620
Score = 20.6 bits (41), Expect(2) = 8.8
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = +1
Query: 493 PPPPXRGGRXXPPP 534
PPPP PPP
Sbjct: 623 PPPPLPNHSVLPPP 636
>03_05_0067 - 20460206-20460703,20461255-20461530
Length = 257
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -1
Query: 519 PPPPXXGGGPXXRXXFXXXGGPPPXXWFPXPXXXPPXXXFXFPPP 385
PPPP GP + G PPP + PP + PPP
Sbjct: 5 PPPPQWAMGPPPPPQYFQAGPPPPPPQY-FQGAHPPAAMWGQPPP 48
>07_03_0329 +
16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/52 (30%), Positives = 18/52 (34%)
Frame = +2
Query: 308 RPXXXXNGNQXGXXXPXXGXPPXXXXGGGKXKXXXGGXXXGXGNXXXGGGPP 463
+P G G G P G G+ GG G G GGGPP
Sbjct: 18 QPGGYGRGGGGGRGRGRDGAPYSGGRGRGQDGSYPGGRGGGYGGGGGGGGPP 69
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 30.3 bits (65), Expect = 2.1
Identities = 24/78 (30%), Positives = 24/78 (30%)
Frame = -1
Query: 519 PPPPXXGGGPXXRXXFXXXGGPPPXXWFPXPXXXPPXXXFXFPPPXXXXGGXPXXGXXXP 340
PPP GGGP G PPP P P P GG P G P
Sbjct: 338 PPPSSYGGGPGSYP--PSYGAPPPNP--PYSGGAPGGQGSLPPSYDGGYGGRPMPGGGGP 393
Query: 339 LWFPXXXXXGRXXXGGXG 286
P G GG G
Sbjct: 394 GAPPPYHGGGGGGGGGGG 411
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/60 (35%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Frame = +2
Query: 362 GXPPXXXXGGGKXKXXXGGXXXGXGNXXXGGGPPXXKKXXRXXG----PPPXKGGGGXXP 529
G PP GGG GG GGGPP G P P GGGG P
Sbjct: 89 GLPP----GGGGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAP 144
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/58 (34%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Frame = -1
Query: 534 WRGXXPPPPXXGG---GPXXRXXFXXXGGPPPXXWFPXPXXXPPXXXFXFPPPXXXXG 370
+RG PPP GG P GGPP P P PP PPP G
Sbjct: 1169 FRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAP-PMPPGVPGGPPPPPGGRG 1225
>04_01_0162 +
1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/58 (27%), Positives = 19/58 (32%)
Frame = -1
Query: 534 WRGXXPPPPXXGGGPXXRXXFXXXGGPPPXXWFPXPXXXPPXXXFXFPPPXXXXGGXP 361
+RG PP G GP + F PP + P P PP G P
Sbjct: 71 YRGPPPPQRPFGAGPPQQGPFAAAAPPPQGPFTSAPSSQGPFAAAPQPPSQGPFGTAP 128
>12_02_0640 - 21447470-21448309
Length = 279
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +1
Query: 247 PPXXGXXKKXNXXXXPPXXXPPPXXXXREPKXXGXPXXXGPPP 375
PP KK PP PPP G P PPP
Sbjct: 192 PPPTTKKKKPQSSRRPPARTPPPERRESPSPPRGRPRTPPPPP 234
>12_02_0635 - 21430245-21431156
Length = 303
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +1
Query: 247 PPXXGXXKKXNXXXXPPXXXPPPXXXXREPKXXGXPXXXGPPP 375
PP KK PP PPP G P PPP
Sbjct: 189 PPPTTKKKKPQSSRRPPARTPPPERRESPSPPRGRPRTPPPPP 231
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/45 (31%), Positives = 16/45 (35%)
Frame = -1
Query: 519 PPPPXXGGGPXXRXXFXXXGGPPPXXWFPXPXXXPPXXXFXFPPP 385
PP GG + PPP + P P PP PPP
Sbjct: 405 PPADPAAGGYTSQPYMGAPPPPPPGSYAPVPWGQPPPYASYPPPP 449
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 656 RXPXGPPXPPPPXKXG 609
R P PP PPPP K G
Sbjct: 619 RPPGAPPPPPPPGKPG 634
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 656 RXPXGPPXPPPPXKXG 609
R P PP PPPP K G
Sbjct: 924 RPPGAPPPPPPPGKPG 939
Score = 25.4 bits (53), Expect(2) = 8.8
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 650 PXGPPXPPPP 621
P GPP PPPP
Sbjct: 938 PGGPPPPPPP 947
Score = 21.0 bits (42), Expect(2) = 8.8
Identities = 9/26 (34%), Positives = 9/26 (34%)
Frame = -2
Query: 818 PPXXGGXCXXPXXGXGXXGXPPPAXP 741
PP P G G PPP P
Sbjct: 921 PPPRPPGAPPPPPPPGKPGGPPPPPP 946
>03_01_0164 -
1326002-1326409,1326410-1326428,1326523-1326647,
1327482-1327530,1328834-1328855,1328969-1329071
Length = 241
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Frame = -1
Query: 528 GXXPPPPXXGGGPXXRXX--FXXXGGPPPXXWFPXPXXXPPXXXFXFPPPXXXXG 370
G P PP G P + G PP +P P PP +PPP G
Sbjct: 188 GYPPAPPAQGYPPAAYPPAGYPQGGAYPPPGSYPPPGSYPPQG--SYPPPQGYYG 240
>01_01_0082 + 625198-625719
Length = 173
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Frame = -1
Query: 519 PPPPXXGGGPXXRXXFXXXGG--PPPXXWFPXP 427
PPPP GGG + G P P WF P
Sbjct: 94 PPPPYGGGGYNPTPSYNPTPGYNPTPSGWFTPP 126
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 23.8 bits (49), Expect(2) = 9.3
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = -2
Query: 650 PXGPPXPPPPXKXGP 606
P PP PPPP P
Sbjct: 550 PPPPPPPPPPPAPAP 564
Score = 22.6 bits (46), Expect(2) = 9.3
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = -2
Query: 806 GGXCXXPXXGXGXXGXPPPAXP 741
GG P G G PPP P
Sbjct: 534 GGIAIGPLGEEGLVGPPPPPPP 555
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,208,446
Number of Sequences: 37544
Number of extensions: 369676
Number of successful extensions: 3348
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2734
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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