Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_I01
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...    80   4e-16
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    28   2.0  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    27   4.6  

>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score = 80.2 bits (189), Expect = 4e-16
 Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
 Frame = +1

Query: 175 LMASRCVTKAAIAGHAGN-VWAKSEGFEISKAXVAKXVAGFEXESLLTSGGVXIAGTRYI 351
           L+ +  + +AAI   AG+ VWA S GF +S   +    AGF+    +   G+ +AG +YI
Sbjct: 11  LLGTGKIDRAAIVSRAGDSVWAASAGFNLSPQEIQGLAAGFQDPPSMFGTGIILAGQKYI 70

Query: 352 YLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 522
            +      I  KL K G+ C+ T+  +++S Y E   P +AA + E L +YL+  GY
Sbjct: 71  TIRAEGRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALADYLVGVGY 127


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/44 (29%), Positives = 29/44 (65%), Gaps = 5/44 (11%)
 Frame = +2

Query: 680 SLVCTCDYFVD--SGPFLYAHRLXKII---ITA**IKFVLKFCF 796
           +++C C+YF+D  +GPFL +++   ++    ++  ++ VLKF +
Sbjct: 322 AIMCRCEYFLDMLAGPFLESNQELPVLSLPFSSSVVEIVLKFLY 365


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = -2

Query: 368 SVPLR*MYRVPAIXTPPLVSSDSXSKPATXFATXAFEISKPSDFAHTLPA*PAMA 204
           +VPL   Y    + T   + S   SKP+    +   + + P +  H++P+  ++A
Sbjct: 487 NVPLYPAYNSSPVQTRTSLFSSRLSKPSNPIVSSVSQANAPKNALHSMPSPTSLA 541


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,123,892
Number of Sequences: 5004
Number of extensions: 58449
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)