Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_I01
         (873 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    24   5.3  
AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical prote...    24   5.3  
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    23   9.2  

>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 177 NGISLCHKSCHCRSCWQC 230
           NG+++C + C+C S  +C
Sbjct: 806 NGLTICIEKCYCVSFSRC 823


>AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical protein
           protein.
          Length = 297

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 378 PREAWQGRRALHEDTASCGHFSL*RTHPTS 467
           P E  +GR +   D    GH S  RTH  S
Sbjct: 112 PEEKLRGRHSSESDREGMGHDSHKRTHRLS 141


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +3

Query: 180 GISLCHKSCHCRSCWQCVGKVGRLRN 257
           G+ LC K  H R   +   K  R+ N
Sbjct: 730 GVDLCRKQHHSRHLERVANKASRITN 755


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 805,314
Number of Sequences: 2352
Number of extensions: 14733
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 93439926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)