Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_I01
         (873 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55375-5|AAC69045.1|  126|Caenorhabditis elegans Profilin protei...    71   8e-13
AY530910-1|AAT01435.1|  126|Caenorhabditis elegans profilin-3 pr...    71   8e-13
U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protei...    54   1e-07
AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2 pr...    54   1e-07
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U49944-1|AAA93415.3|  508|Caenorhabditis elegans Long protein 2 ...    29   5.7  
AF016687-11|ABL01528.1|  646|Caenorhabditis elegans Hypothetical...    29   5.7  

>U55375-5|AAC69045.1|  126|Caenorhabditis elegans Profilin protein 3
           protein.
          Length = 126

 Score = 71.3 bits (167), Expect = 8e-13
 Identities = 40/116 (34%), Positives = 58/116 (50%)
 Frame = +1

Query: 175 LMASRCVTKAAIAGHAGNVWAKSEGFEISKAXVAKXVAGFEXESLLTSGGVXIAGTRYIY 354
           L+ S  V+KAAI G  G VWAKS+ F IS          F     L   G+ + G +++ 
Sbjct: 11  LIGSGNVSKAAILGFDGAVWAKSDNFNISVEEAVAAGKAFTSLDALLGTGLRLEGQKFLV 70

Query: 355 LSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 522
           L+  +  I  K G  G    KT QAV+IS+YE+ +QP+  +     L +Y  +  Y
Sbjct: 71  LNADNDRIIGKQGGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADYFRSIKY 126


>AY530910-1|AAT01435.1|  126|Caenorhabditis elegans profilin-3
           protein.
          Length = 126

 Score = 71.3 bits (167), Expect = 8e-13
 Identities = 40/116 (34%), Positives = 58/116 (50%)
 Frame = +1

Query: 175 LMASRCVTKAAIAGHAGNVWAKSEGFEISKAXVAKXVAGFEXESLLTSGGVXIAGTRYIY 354
           L+ S  V+KAAI G  G VWAKS+ F IS          F     L   G+ + G +++ 
Sbjct: 11  LIGSGNVSKAAILGFDGAVWAKSDNFNISVEEAVAAGKAFTSLDALLGTGLRLEGQKFLV 70

Query: 355 LSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 522
           L+  +  I  K G  G    KT QAV+IS+YE+ +QP+  +     L +Y  +  Y
Sbjct: 71  LNADNDRIIGKQGGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADYFRSIKY 126


>U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protein 2
           protein.
          Length = 131

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
 Frame = +1

Query: 184 SRCVTKAAIAGHAGNVWAKS---EGFEISKAXVAKXVAGFEXESLLTSGGVXIAGTRYIY 354
           S  + +AAI G  G+VWA+S     F  ++  + +  A F   + +   G  +    YI 
Sbjct: 15  SPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFNDINSVPGTGADLEEIHYIV 74

Query: 355 LSGTDHIIRAKLGKVGVHCMKTQQAVVISLYE-EPIQPQQAASVVEKLGEYLITCGY 522
               + +I  K  + G    KT QA+VI++YE +  Q     + VE + +YL + GY
Sbjct: 75  PRVEEKLIFGKKEQTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIAQYLASSGY 131


>AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2
           protein.
          Length = 131

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
 Frame = +1

Query: 184 SRCVTKAAIAGHAGNVWAKS---EGFEISKAXVAKXVAGFEXESLLTSGGVXIAGTRYIY 354
           S  + +AAI G  G+VWA+S     F  ++  + +  A F   + +   G  +    YI 
Sbjct: 15  SPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFNDINSVPGTGADLEEIHYIV 74

Query: 355 LSGTDHIIRAKLGKVGVHCMKTQQAVVISLYE-EPIQPQQAASVVEKLGEYLITCGY 522
               + +I  K  + G    KT QA+VI++YE +  Q     + VE + +YL + GY
Sbjct: 75  PRVEEKLIFGKKEQTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIAQYLASSGY 131


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 138 SKCAGKSSCRXTVNGISLCHKSCHCRSCWQCVGKVGRLR 254
           S+C G  SC     GI  C K CH + C +C     R+R
Sbjct: 431 SECDGMFSC-----GIHHCTKKCHDKECGECETGANRIR 464


>U49944-1|AAA93415.3|  508|Caenorhabditis elegans Long protein 2
           protein.
          Length = 508

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 162 CRXTVNGISLCHKSCHCRSCWQCVGKVGR 248
           C  T+ GI+ CH SC   S  +C GK  R
Sbjct: 242 CNCTMAGITPCHTSC-SNSMEKCFGKFSR 269


>AF016687-11|ABL01528.1|  646|Caenorhabditis elegans Hypothetical
           protein T21D12.7 protein.
          Length = 646

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 165 RXTVNGISLCHKSCHCRSCWQCVGKVGR 248
           R ++N I+ C +  HC   + C  KVG+
Sbjct: 189 RYSINNIATCMEDKHCPRNYTCTSKVGK 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,522,911
Number of Sequences: 27780
Number of extensions: 335700
Number of successful extensions: 762
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)