Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_H24
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    33   0.072
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    26   8.2  

>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 22/79 (27%), Positives = 31/79 (39%)
 Frame = +2

Query: 476 MSDVMDLATPNYSTPIINTTYVASLQFDMRAMGPLYNSTHMIIDAIANKXAYPEGIVSVS 655
           MS+  D   P+Y    +  + V      +  M  L    H+I D   N    P G V V 
Sbjct: 117 MSEYGDRMLPSYHPTTLYVSRVLKRIIAVSGMSDLKWELHVIRDPTPNAFVLPGGKVFVF 176

Query: 656 DGHLDIASPRDNWKVLLAH 712
           +G L +    D    +LAH
Sbjct: 177 EGILPMCKGEDGLAAVLAH 195


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 440 DMNKISQQLILDMSDVMDLATPNYS 514
           D+NKISQQ  +++S      TPN S
Sbjct: 255 DVNKISQQGFVEISSNSSKVTPNTS 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,479,684
Number of Sequences: 5004
Number of extensions: 72292
Number of successful extensions: 218
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)