Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_H24
         (889 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF197345-1|AAF07212.1| 1013|Drosophila melanogaster prominin-lik...    36   0.057
AF127935-1|AAD22487.2| 1013|Drosophila melanogaster prominin-lik...    36   0.057
AE014296-563|AAN11531.1| 1013|Drosophila melanogaster CG7740-PC,...    36   0.057
AE014296-562|AAN11530.1| 1013|Drosophila melanogaster CG7740-PB,...    36   0.057
AE014296-561|AAF47716.2| 1013|Drosophila melanogaster CG7740-PA,...    36   0.057

>AF197345-1|AAF07212.1| 1013|Drosophila melanogaster prominin-like
           protein protein.
          Length = 1013

 Score = 36.3 bits (80), Expect = 0.057
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +2

Query: 530 TTYVASLQFDMRAMGPLYNSTHMIIDAIANK-XAYPEGIVSVSDGHLDIASPR---DNWK 697
           T Y  +      AM P++N TH + D +  +    PEG + V +       P+   ++W+
Sbjct: 98  TNYTKAPPPPTSAMNPIFNFTHFLYDKVLYRDEPIPEGYIVVKNSDTLSLGPKVEENDWR 157

Query: 698 VLLAHY 715
            LLAHY
Sbjct: 158 DLLAHY 163


>AF127935-1|AAD22487.2| 1013|Drosophila melanogaster prominin-like
           protein protein.
          Length = 1013

 Score = 36.3 bits (80), Expect = 0.057
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +2

Query: 530 TTYVASLQFDMRAMGPLYNSTHMIIDAIANK-XAYPEGIVSVSDGHLDIASPR---DNWK 697
           T Y  +      AM P++N TH + D +  +    PEG + V +       P+   ++W+
Sbjct: 98  TNYTKAPPPPTSAMNPIFNFTHFLYDKVLYRDEPIPEGYIVVKNSDTLSLGPKVEENDWR 157

Query: 698 VLLAHY 715
            LLAHY
Sbjct: 158 DLLAHY 163


>AE014296-563|AAN11531.1| 1013|Drosophila melanogaster CG7740-PC,
           isoform C protein.
          Length = 1013

 Score = 36.3 bits (80), Expect = 0.057
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +2

Query: 530 TTYVASLQFDMRAMGPLYNSTHMIIDAIANK-XAYPEGIVSVSDGHLDIASPR---DNWK 697
           T Y  +      AM P++N TH + D +  +    PEG + V +       P+   ++W+
Sbjct: 98  TNYTKAPPPPTSAMNPIFNFTHFLYDKVLYRDEPIPEGYIVVKNSDTLSLGPKVEENDWR 157

Query: 698 VLLAHY 715
            LLAHY
Sbjct: 158 DLLAHY 163


>AE014296-562|AAN11530.1| 1013|Drosophila melanogaster CG7740-PB,
           isoform B protein.
          Length = 1013

 Score = 36.3 bits (80), Expect = 0.057
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +2

Query: 530 TTYVASLQFDMRAMGPLYNSTHMIIDAIANK-XAYPEGIVSVSDGHLDIASPR---DNWK 697
           T Y  +      AM P++N TH + D +  +    PEG + V +       P+   ++W+
Sbjct: 98  TNYTKAPPPPTSAMNPIFNFTHFLYDKVLYRDEPIPEGYIVVKNSDTLSLGPKVEENDWR 157

Query: 698 VLLAHY 715
            LLAHY
Sbjct: 158 DLLAHY 163


>AE014296-561|AAF47716.2| 1013|Drosophila melanogaster CG7740-PA,
           isoform A protein.
          Length = 1013

 Score = 36.3 bits (80), Expect = 0.057
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +2

Query: 530 TTYVASLQFDMRAMGPLYNSTHMIIDAIANK-XAYPEGIVSVSDGHLDIASPR---DNWK 697
           T Y  +      AM P++N TH + D +  +    PEG + V +       P+   ++W+
Sbjct: 98  TNYTKAPPPPTSAMNPIFNFTHFLYDKVLYRDEPIPEGYIVVKNSDTLSLGPKVEENDWR 157

Query: 698 VLLAHY 715
            LLAHY
Sbjct: 158 DLLAHY 163


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,789,485
Number of Sequences: 53049
Number of extensions: 834001
Number of successful extensions: 2385
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2385
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4332305172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)