Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_H22
(889 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032646-10|CAA21681.1| 725|Caenorhabditis elegans Hypothetical... 136 1e-32
AL032646-11|CAE46682.1| 193|Caenorhabditis elegans Hypothetical... 80 2e-15
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 37 0.017
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 35 0.089
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 34 0.16
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 34 0.16
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 32 0.63
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 32 0.63
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 32 0.63
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 31 1.5
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 31 1.5
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 30 2.5
Z81557-14|CAN99712.1| 321|Caenorhabditis elegans Hypothetical p... 29 4.4
Z81557-13|CAB04530.2| 303|Caenorhabditis elegans Hypothetical p... 29 4.4
U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr... 29 4.4
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z81567-6|CAB04589.2| 140|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z81522-10|CAM33496.1| 140|Caenorhabditis elegans Hypothetical p... 28 7.8
AL032643-5|CAA21656.1| 622|Caenorhabditis elegans Hypothetical ... 28 7.8
>AL032646-10|CAA21681.1| 725|Caenorhabditis elegans Hypothetical
protein Y54E2A.11a protein.
Length = 725
Score = 136 bits (330), Expect = 1e-32
Identities = 78/225 (34%), Positives = 111/225 (49%), Gaps = 8/225 (3%)
Frame = +2
Query: 218 LLADILEQKPKESDGYENVVVVDGCPQVGPERLEKLQSVINKIFSKFGKIVNEYYPTTEN 397
L+ D+L +KP + +N V + G P VG +RL KLQSV+ K+ + V Y P +
Sbjct: 29 LVPDVLHKKPTIDEFEDNCVFIAGIPVVGADRLGKLQSVLKKVLERLDPAVKLYIPPSPE 88
Query: 398 GLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSDIPKEWEPPAPQP 577
G G + E+++ ++A AVK+ N DK HTF F D ++ W P Q
Sbjct: 89 GGCLGVLLTEWADQRSAQFAVKSLNGYAFDKNHTFTARSFKDMKQLEAPSDHWTTPEKQA 148
Query: 578 FKVQSDLQWYLMDPDAYDQFLGWHWDWCGSPGVAECIT---*TPWLL-----QERPNWTE 733
+ DL W+L + DQF H D G P V P L ER NWTE
Sbjct: 149 YNDVGDLWWWLQNERCRDQFAISH-DKLGVPTVGVFTNMKGNDPELAGDADKAERANWTE 207
Query: 734 TYAVWSPLGTYLATFHWRGVALWAGPKFSQFQKFSTLKLGYIIFS 868
T WSP G+YL+T H +G+ LW G +++ +F+ + YI FS
Sbjct: 208 TVFTWSPHGSYLSTIHKQGIILWGGKDYARAHRFAHTNVQYIDFS 252
>AL032646-11|CAE46682.1| 193|Caenorhabditis elegans Hypothetical
protein Y54E2A.11b protein.
Length = 193
Score = 80.2 bits (189), Expect = 2e-15
Identities = 40/119 (33%), Positives = 60/119 (50%)
Frame = +2
Query: 218 LLADILEQKPKESDGYENVVVVDGCPQVGPERLEKLQSVINKIFSKFGKIVNEYYPTTEN 397
L+ D+L +KP + +N V + G P VG +RL KLQSV+ K+ + V Y P +
Sbjct: 29 LVPDVLHKKPTIDEFEDNCVFIAGIPVVGADRLGKLQSVLKKVLERLDPAVKLYIPPSPE 88
Query: 398 GLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSDIPKEWEPPAPQ 574
G G + E+++ ++A AVK+ N DK HTF F D ++ W P Q
Sbjct: 89 GGCLGVLLTEWADQRSAQFAVKSLNGYAFDKNHTFTARSFKDMKQLEAPSDHWTTPEKQ 147
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 37.1 bits (82), Expect = 0.017
Identities = 17/54 (31%), Positives = 33/54 (61%)
Frame = +2
Query: 326 QSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 487
+ + K+F+KFG I + T E G + G+ F+ ++NP+ A AV+A ++ ++
Sbjct: 226 KETLEKVFAKFGNITSCEVMTVE-GKSKGFGFVAFANPEEAETAVQALHDSTIE 278
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 347 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 505
FS FG I++ E+G + GY F+ + + A A++ N L + F+
Sbjct: 140 FSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 34.7 bits (76), Expect = 0.089
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +2
Query: 299 VGPERLEKLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNC 478
VG E +S + + F +GKI E G GY F+EYS+ A K +
Sbjct: 108 VGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKADGI 167
Query: 479 KLD 487
K+D
Sbjct: 168 KVD 170
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 33.9 bits (74), Expect = 0.16
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +2
Query: 326 QSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 487
Q ++ +FSKFG+I + T G G+ F+ +++ A +AV+ N+ L+
Sbjct: 251 QEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILE 304
Score = 31.5 bits (68), Expect = 0.83
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 347 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 475
FS FG I + ENG + G+ F+ + P+ A AV N+
Sbjct: 363 FSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNS 405
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 347 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 505
FS FG I++ T + G + GY F+ + +A A++ N L + ++
Sbjct: 165 FSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 33.9 bits (74), Expect = 0.16
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +2
Query: 326 QSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 487
Q ++ +FSKFG+I + T G G+ F+ +++ A +AV+ N+ L+
Sbjct: 251 QEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILE 304
Score = 31.5 bits (68), Expect = 0.83
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 347 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 475
FS FG I + ENG + G+ F+ + P+ A AV N+
Sbjct: 363 FSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNS 405
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 347 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 505
FS FG I++ T + G + GY F+ + +A A++ N L + ++
Sbjct: 165 FSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 31.9 bits (69), Expect = 0.63
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 299 VGPERLEKLQSVINKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 475
VG + + I IFSK G +++ + E G GY F+E+ + Q A A++ N
Sbjct: 22 VGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNLNG 81
Query: 476 CKL 484
+L
Sbjct: 82 YEL 84
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 31.9 bits (69), Expect = 0.63
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 317 EKLQSVINKIFSKFGKIVNEYYPTTEN-GLTTGYIFLEYSNPQNAAEAVKATNNCKL 484
E + ++ FS++GKI N + G GY +EY + A EA+ +N+ L
Sbjct: 65 EATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTDL 121
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 31.9 bits (69), Expect = 0.63
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +2
Query: 323 LQSVINKIFSKFGKIVNEYYPTTE--NGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 487
L++ + +IFS +G I N P N + GY ++EY N ++A +++K + ++D
Sbjct: 145 LKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIKHMDGGQID 201
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 347 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 505
FS FG I++ E+G + GY F+ + + A A++ N L + F+
Sbjct: 77 FSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 129
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 347 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 505
FS FG I++ E+G + GY F+ + + A A++ N L + F+
Sbjct: 140 FSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 299 VGPERLEKLQSVINKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 475
VG + + + +F K GKI + +G + GY F+ Y N ++AA A K +
Sbjct: 204 VGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTYDG 263
Query: 476 CKLDKQHTFLVNL 514
++ VN+
Sbjct: 264 HEISTGKPLKVNV 276
>Z81557-14|CAN99712.1| 321|Caenorhabditis elegans Hypothetical
protein F59A1.11b protein.
Length = 321
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +2
Query: 308 ERLEKLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 487
+RL +QSVIN I S F IVNE + + G+ F +S+ + +
Sbjct: 67 QRLIIVQSVINIIASVFELIVNEIQTVNLDYVKIGHPFWHFSHVERVIYTISMETFSTSS 126
Query: 488 KQHTFLVNL 514
+ L NL
Sbjct: 127 QDFLMLFNL 135
>Z81557-13|CAB04530.2| 303|Caenorhabditis elegans Hypothetical
protein F59A1.11a protein.
Length = 303
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +2
Query: 308 ERLEKLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 487
+RL +QSVIN I S F IVNE + + G+ F +S+ + +
Sbjct: 67 QRLIIVQSVINIIASVFELIVNEIQTVNLDYVKIGHPFWHFSHVERVIYTISMETFSTSS 126
Query: 488 KQHTFLVNL 514
+ L NL
Sbjct: 127 QDFLMLFNL 135
>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical
protein R08E3.1b protein.
Length = 1465
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 400 SILGRGV-VFVDNFTEFTKYFVYNAL*FLKTLGADLRTPVYDYNVFITVRF 251
S++G G+ + ++ +F Y Y + ++L + TP +NVF T +F
Sbjct: 725 SLVGNGIPIAINGAKDFENYLTYYVVPLFQSLQYQVNTPQRVFNVFQTGQF 775
>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical
protein R08E3.1a protein.
Length = 1512
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 400 SILGRGV-VFVDNFTEFTKYFVYNAL*FLKTLGADLRTPVYDYNVFITVRF 251
S++G G+ + ++ +F Y Y + ++L + TP +NVF T +F
Sbjct: 725 SLVGNGIPIAINGAKDFENYLTYYVVPLFQSLQYQVNTPQRVFNVFQTGQF 775
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 299 VGPERLEKLQSVINKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 475
VG + ++ F+KFG++ + + + GY F+ + N QNA A+ N
Sbjct: 139 VGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNG 198
Query: 476 CKLDKQ 493
+ K+
Sbjct: 199 KWIGKR 204
>Z81567-6|CAB04589.2| 140|Caenorhabditis elegans Hypothetical
protein K08C9.6 protein.
Length = 140
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +2
Query: 416 IFLEYSNPQNAA-EAVKATNNCKLDKQHTFLVNLFTDFQKYSDIPKEWEPPAPQPFKVQS 592
IF E N N+ + + N +D ++ L T + Y ++ +W + F +
Sbjct: 21 IFEEIKNIWNSVIDFIDPPENFYIDTKYDLDCKLITCLKTYYEMYSDWFQDRARNFCREE 80
Query: 593 DLQWYLMDPDAYDQFLGW 646
++ +AYD FL W
Sbjct: 81 NMNHTPQPNNAYDGFLPW 98
>Z81522-10|CAM33496.1| 140|Caenorhabditis elegans Hypothetical
protein K08C9.6 protein.
Length = 140
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +2
Query: 416 IFLEYSNPQNAA-EAVKATNNCKLDKQHTFLVNLFTDFQKYSDIPKEWEPPAPQPFKVQS 592
IF E N N+ + + N +D ++ L T + Y ++ +W + F +
Sbjct: 21 IFEEIKNIWNSVIDFIDPPENFYIDTKYDLDCKLITCLKTYYEMYSDWFQDRARNFCREE 80
Query: 593 DLQWYLMDPDAYDQFLGW 646
++ +AYD FL W
Sbjct: 81 NMNHTPQPNNAYDGFLPW 98
>AL032643-5|CAA21656.1| 622|Caenorhabditis elegans Hypothetical
protein Y54E5A.7 protein.
Length = 622
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 681 NALPEPPGCYRRDQTGPKPMPS 746
N L EPP C+ TG P P+
Sbjct: 334 NTLHEPPNCFTNSTTGRSPSPT 355
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,305,781
Number of Sequences: 27780
Number of extensions: 453098
Number of successful extensions: 1209
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -