Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_H20
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    29   0.92 
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   2.8  
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    27   2.8  
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc...    26   8.5  

>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 667 QDLLPEDLCLPENLYHYITSIGNTTTVNGEEIKXIYQT 780
           Q+LLP D+  P  L  + T+ GN   +  +  K +YQ+
Sbjct: 136 QELLPSDVATPAFLEAWTTAYGNLAKILIDSEKKVYQS 173


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = -2

Query: 618 DDVCIKNSTHRMLEHN*RAYA-YPIVGPRP*EPHRCAPPDQYSHQTQSFESKFS*NRDRA 442
           DDV   +S+HR   H+ R+Y+     G R   PH      Q     +S +   S    R+
Sbjct: 101 DDVVTNSSSHRTPRHHRRSYSPRSDYGSRSPSPHSSVDSHQSRSPVRSRDRDRSSRSSRS 160

Query: 441 *YGVPSS*SGXINWGRFPPFA 379
            +    S     ++ R PP++
Sbjct: 161 RHPSSRSRHRYDDYSRSPPYS 181


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +3

Query: 414 RSTNLGPHT-KLDPCFKKTYSQN--FEFGGYIDQVERTYEALRGVDPRLDRRMPF 569
           R +  GP+  K+    +KTY +     FG    ++   Y+++  VD  LDR  PF
Sbjct: 173 RVSGRGPYAAKMLELLEKTYQEEATINFGKVEGEISALYDSVLLVDRSLDRITPF 227


>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -1

Query: 460 LKQGSSLVWGPKFVER 413
           L+ G++LVWGP+ V++
Sbjct: 28  LRYGANLVWGPEIVDK 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,041,163
Number of Sequences: 5004
Number of extensions: 57204
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)