Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_H19
(865 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac... 80 3e-16
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz... 69 7e-13
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz... 50 6e-07
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 30 0.37
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p... 28 2.0
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 26 6.0
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch... 26 7.9
>SPBC16E9.09c |||COPII vesicle coat component
Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 80.2 bits (189), Expect = 3e-16
Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 4/178 (2%)
Frame = +2
Query: 158 YFHIAXGARKCFIXXIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVRDP--NDRI 331
+F+ KCF+ +P V K E ++ ++ ++ T+ I + V+V + N+ +
Sbjct: 21 HFYFDGSKPKCFLKDMPKGMMVTGIVKAEQWNNEANKWV-TSNNIKIRVQVDETFANNHL 79
Query: 332 LLSRVYSLEGMISFTSSTPGEHVICMYSNST-SWFSGSQLRVHLDIQVGEHAVDYANVAQ 508
+ + FT++ G H IC S S +WFS ++ R+H+D+ + Y +A
Sbjct: 80 IYKNDLRSNEAVRFTTTNEGTHRICYLSTSDGAWFSSTKTRLHVDLASDDK---YNLIAS 136
Query: 509 KE-KLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWWSLLQTGVL 679
E + +L R+ L ++ I EQ QR RE FR TSES N RV+ W+++Q VL
Sbjct: 137 SEDEAKDLTDRVAALNTRLESILGEQMLQRSREMTFRDTSESANSRVVRWTIVQIVVL 194
Score = 26.6 bits (56), Expect = 4.5
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 585 LTRGKEKSVFDKHQKAQTSECSGGVCYRQVSLXIIGYWQMRHLKSFFEAXKLV 743
L R +E + D + A S + V L + WQ+ HL+ FF KLV
Sbjct: 164 LQRSREMTFRDTSESAN-SRVVRWTIVQIVVLLVTCIWQLSHLQRFFVKEKLV 215
>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 69.3 bits (162), Expect = 7e-13
Identities = 40/126 (31%), Positives = 64/126 (50%)
Frame = +2
Query: 302 VEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVGEH 481
+ + +P +I+ V + SFT PG+++ C Y+++ G V ++ H
Sbjct: 60 MSIYNPAGQIMHQEVPNSMAQYSFTVKNPGKYMYCFYNDA---LDGESKEVLFNV----H 112
Query: 482 AVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWWSL 661
V Y + + L ++RQL D + ++ EQ Y RE R T+ESTN RV WWS+
Sbjct: 113 GVIYISDEDLDANNPLLGKVRQLHDTISKVKHEQEYFVARERIHRNTAESTNDRVKWWSI 172
Query: 662 LQTGVL 679
LQT +L
Sbjct: 173 LQTVIL 178
>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 49.6 bits (113), Expect = 6e-07
Identities = 25/65 (38%), Positives = 39/65 (60%)
Frame = +2
Query: 452 VHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSES 631
V L+ VG A DY+++ + L ++ IR+ D + +I + Y + RE RFR T+ES
Sbjct: 119 VKLEFTVGADADDYSSLQKANNLEPVEADIRRARDFIEEIKGKIYYLQAREARFRNTNES 178
Query: 632 TNQRV 646
TN+RV
Sbjct: 179 TNERV 183
Score = 26.6 bits (56), Expect = 4.5
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 672 VSLXIIGYWQMRHLKSFFEAXKLV 743
+SL ++ WQ+ +L+SFF+ L+
Sbjct: 192 ISLFVLVIWQILYLRSFFQRKHLI 215
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 30.3 bits (65), Expect = 0.37
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 552 WIKYTRSQRSRLTRGKEKSVFDKHQKAQTSECSGGVCYRQ 671
W+ + S+R L + ++++V K ++ Q CS VC R+
Sbjct: 266 WLSLSESERRSLVKVEKEAVLQKMKEQQKYSCSCSVCGRK 305
>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 392
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 188 CFIXXIPDDTTVI-VNYKVELYDPKSGGFMQTTPGIGMHV 304
C++ + DDT ++ +NY + Y PK Q GI + V
Sbjct: 49 CYMFKLMDDTGIVELNYSLSKYSPKFEMLRQLQLGISVFV 88
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 26.2 bits (55), Expect = 6.0
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Frame = -2
Query: 384 VLDVNEIIPSNE*TRDNSILSFGSRTS----TCMPMPGVVCMNPPDFGSYNSTL*FTITV 217
V D+ EI+PS T NS+ GS T+ + M + P G + ++L T T
Sbjct: 533 VTDIKEILPSQHDTPHNSVKLTGSSTTPASVSLRQMIEPLLSRTPPKGEFTNSLDDTPT- 591
Query: 216 VSSGIXXIKHXRAPXAMWKYKAEAQSASNAXTXSEDNLXSSMFSANINARNGN 58
S + + W+ +E+ SAS + + S+ S++I+ + N
Sbjct: 592 -QSNVEKVDRF-LENHDWETCSESSSASEDQSLCKQLSSFSLSSSDISKKLKN 642
>SPAC4F10.18 |||WD repeat protein, human NUP37
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 194 IXXIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVRDPNDRILLSR 343
I + DD T+I+ +++ P G+ ++PGI + +PN I+ R
Sbjct: 157 IASVGDDCTLII-WRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGER 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,104
Number of Sequences: 5004
Number of extensions: 50900
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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