Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_H19
(865 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1385 + 26189034-26189294,26189427-26189636,26191016-261910... 61 1e-09
09_04_0359 + 16941904-16942110,16943636-16943785,16944084-169442... 59 4e-09
03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312 56 5e-08
06_03_1058 + 27254195-27254382,27255041-27255116,27255254-272554... 30 2.1
09_04_0676 - 19383757-19383890,19384308-19384415,19384493-193846... 30 2.7
04_01_0500 - 6540769-6541482,6541819-6541877,6541965-6542064,654... 29 3.6
11_01_0551 + 4361640-4363386,4363443-4363687 29 4.8
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 29 4.8
12_01_0223 + 1708420-1708512,1708790-1709008,1709117-1709330,170... 28 8.4
01_05_0184 + 19005991-19006129,19006523-19006692,19007408-19007659 28 8.4
>07_03_1385 +
26189034-26189294,26189427-26189636,26191016-26191092,
26191196-26191340
Length = 230
Score = 60.9 bits (141), Expect = 1e-09
Identities = 42/173 (24%), Positives = 79/173 (45%), Gaps = 1/173 (0%)
Frame = +2
Query: 161 FHIAXGARKCFIXXIPDDTTVIVNYKVELYDPK-SGGFMQTTPGIGMHVEVRDPNDRILL 337
F + G KC I ++ V+ Y V DP + + I + V N
Sbjct: 40 FDLESGHTKCISDEIKVNSMVVGKYHVVGPDPNFPDNPLPDSHRISLRVTSPYGNSVHYA 99
Query: 338 SRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVGEHAVDYANVAQKEK 517
V S G +FT++ G+++ C ++ + D + G A D++NVA+K +
Sbjct: 100 ENVPS--GNFAFTATEAGDYLACFWAPDHK--PPVSIGFEFDWRSGVAAKDWSNVAKKGQ 155
Query: 518 LTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWWSLLQTGV 676
+ +++ +++L + + I +E Y R+REE + ++ TN R+ W L G+
Sbjct: 156 VDVMEMELKKLEETIKSIHEEMFYLREREEEMQNLNKQTNSRMAWLGFLSLGI 208
>09_04_0359 +
16941904-16942110,16943636-16943785,16944084-16944293,
16944376-16944452,16944554-16944698
Length = 262
Score = 59.3 bits (137), Expect = 4e-09
Identities = 36/124 (29%), Positives = 62/124 (50%)
Frame = +2
Query: 293 GMHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQV 472
G +V P I+ + G SFT++ G ++ C ++ + ++++LD +V
Sbjct: 115 GTPAKVTSPFGDIVHHKQKVSTGQFSFTTAEAGNYLACFSADGRN--KRLVVKLNLDWRV 172
Query: 473 GEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLW 652
G D+ +VA+KEKL ++L + +L V I + R +E R TSE TN R W
Sbjct: 173 GIATKDWDSVAKKEKLEGVELELVKLETSVQAIHENLLLLRSKEANMRDTSEKTNARATW 232
Query: 653 WSLL 664
S++
Sbjct: 233 LSII 236
>03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312
Length = 232
Score = 55.6 bits (128), Expect = 5e-08
Identities = 27/98 (27%), Positives = 54/98 (55%)
Frame = +2
Query: 359 GMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVGEHAVDYANVAQKEKLTELQLR 538
G +FT+S G+++ C ++ + + D + G A D+ NVA+K ++ +++
Sbjct: 107 GNFAFTASEAGDYLACFWAPDHR--PTATVGFEFDWRSGVSARDWTNVAKKGQVDMMEVE 164
Query: 539 IRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLW 652
+++L D ++ I +E Y R REE ++ + TN R+ W
Sbjct: 165 LKKLEDTINSIHEEMFYLRAREEEMQELNRRTNSRMAW 202
>06_03_1058 +
27254195-27254382,27255041-27255116,27255254-27255418,
27255580-27255671,27255713-27255754,27256342-27256387,
27258456-27258683
Length = 278
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +2
Query: 443 QLRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQT 622
QL L Q GE D ++V+ ++L++LQL++ L +VH K++ +Q E+ R
Sbjct: 103 QLEASLRRQTGE---DLSSVSTVDELSQLQLQLESSLSKVH-ARKDELMSQQLEDMRRMV 158
Query: 623 SES 631
S
Sbjct: 159 HYS 161
>09_04_0676 -
19383757-19383890,19384308-19384415,19384493-19384679,
19384937-19385143
Length = 211
Score = 29.9 bits (64), Expect = 2.7
Identities = 28/129 (21%), Positives = 55/129 (42%)
Frame = +2
Query: 293 GMHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQV 472
G+ + VRDPN + + F G H C ++N + + V D+ V
Sbjct: 65 GVDLVVRDPNGNQIHDSRDKISDKFEFIVHRRGVHRFC-FTNKSPYHE----TVDFDVLV 119
Query: 473 GEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLW 652
H Y A+ E + L +I +L + ++ I EQ + + +R +E+ ++R +
Sbjct: 120 -SHFSYYDQHAKDEHFSALFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAVH 178
Query: 653 WSLLQTGVL 679
+ ++ L
Sbjct: 179 KAFFESAAL 187
>04_01_0500 -
6540769-6541482,6541819-6541877,6541965-6542064,
6542113-6542322,6542507-6542765,6544022-6544215
Length = 511
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +2
Query: 560 VHQITKEQAYQRQREERFRQTSESTNQRVLWWSLLQTGVL 679
+H+ ++Q Q+Q+++RF + N VLW S++ TGVL
Sbjct: 258 LHEQQQQQQQQQQQQQRFLIAVQ--NVLVLWDSVILTGVL 295
>11_01_0551 + 4361640-4363386,4363443-4363687
Length = 663
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 606 SVFDKHQKAQTSECSGGVCYRQVSLXIIGYWQM 704
++FD++QK ++S CS V+L ++G W +
Sbjct: 2 ALFDRNQKQRSSLCSTATVVVFVALCLVGLWMI 34
>03_03_0008 -
13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 561 YTRSQRSRLTRGKEKSVFDKHQKAQTSECSGGVCYRQVSLXIIG 692
YTRS+ S L R + D + + + SGG C V L G
Sbjct: 159 YTRSRVSSLRRSRSSLNTDTRKAQDSGKLSGGTCLASVDLAADG 202
>12_01_0223 +
1708420-1708512,1708790-1709008,1709117-1709330,
1709901-1710001
Length = 208
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/62 (20%), Positives = 33/62 (53%)
Frame = +2
Query: 464 IQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQR 643
+ GEH + +N A ++ +E + +QL ++ + ++AY + E ++ E ++R
Sbjct: 66 VLTGEHKGEISNTADLDQSSEAKSDKKQLSEKDEMKSIQEAYAKAYYEAIQKRQEDEDKR 125
Query: 644 VL 649
++
Sbjct: 126 MI 127
>01_05_0184 + 19005991-19006129,19006523-19006692,19007408-19007659
Length = 186
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 639 WFVLSDVCRKRSSLCLW*A-CSFVIWCT 559
WF + ++C K +CL+ A C +W T
Sbjct: 155 WFSVPEICEKHQVICLYCASCMLDVWYT 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,113,976
Number of Sequences: 37544
Number of extensions: 329608
Number of successful extensions: 850
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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