Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_H19
(865 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117207-7|CAB60397.1| 211|Caenorhabditis elegans Hypothetical ... 262 3e-70
AC199170-2|ABO33261.1| 167|Caenorhabditis elegans Hypothetical ... 174 6e-44
Z74035-1|CAA98480.1| 204|Caenorhabditis elegans Hypothetical pr... 76 3e-14
AF039713-7|AAB96722.1| 203|Caenorhabditis elegans Hypothetical ... 58 6e-09
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 33 0.26
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 33 0.26
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 33 0.26
M37235-1|AAA28122.1| 273|Caenorhabditis elegans myosin II protein. 33 0.26
AL132904-19|CAD91707.1| 371|Caenorhabditis elegans Hypothetical... 29 5.7
Z34802-3|CAA84333.1| 354|Caenorhabditis elegans Hypothetical pr... 28 7.5
U41542-2|AAR30212.1| 623|Caenorhabditis elegans Suppressor of p... 28 9.9
U41542-1|AAR30211.1| 684|Caenorhabditis elegans Suppressor of p... 28 9.9
>AL117207-7|CAB60397.1| 211|Caenorhabditis elegans Hypothetical
protein Y60A3A.9 protein.
Length = 211
Score = 262 bits (641), Expect = 3e-70
Identities = 120/174 (68%), Positives = 143/174 (82%)
Frame = +2
Query: 158 YFHIAXGARKCFIXXIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVRDPNDRILL 337
YFHIA +KCFI IPD+T V NYKV+LYDP + G+ P IGMHVEV+DP D+++L
Sbjct: 18 YFHIAETEKKCFIEEIPDETMVTGNYKVQLYDPNTKGYGDY-PNIGMHVEVKDPEDKVIL 76
Query: 338 SRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVGEHAVDYANVAQKEK 517
S++Y+ EG +FTS+TPGEHVIC+YSNST+WF+G+QLRVHLDIQ G+HA DYA +AQK+K
Sbjct: 77 SKLYTAEGRFTFTSNTPGEHVICIYSNSTAWFNGAQLRVHLDIQAGDHAQDYAQIAQKDK 136
Query: 518 LTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWWSLLQTGVL 679
L ELQLRIRQLLDQV QITKEQ YQR REERFRQTSESTN RV +WS+ Q VL
Sbjct: 137 LNELQLRIRQLLDQVDQITKEQNYQRYREERFRQTSESTNSRVFYWSIAQVVVL 190
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Frame = +3
Query: 555 IKYTRSQRSRLTRGKEKSVFDKHQKAQTSECSGG-VCYRQVS----LXIIGYWQMRHLKS 719
I+ Q ++T+ + + + + QTSE + V Y ++ L I G WQMRHL+
Sbjct: 144 IRQLLDQVDQITKEQNYQRYREERFRQTSESTNSRVFYWSIAQVVVLAITGAWQMRHLRG 203
Query: 720 FFEAXKLV 743
FFEA KLV
Sbjct: 204 FFEAKKLV 211
>AC199170-2|ABO33261.1| 167|Caenorhabditis elegans Hypothetical
protein T08D2.1 protein.
Length = 167
Score = 174 bits (424), Expect = 6e-44
Identities = 76/123 (61%), Positives = 98/123 (79%)
Frame = +2
Query: 158 YFHIAXGARKCFIXXIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVRDPNDRILL 337
YFHIA +KCFI IPD+T V NYKV+LYDP + G+ P IGMHVEV+DP D+++L
Sbjct: 18 YFHIAETEKKCFIEEIPDETMVTGNYKVQLYDPNTKGYGDY-PNIGMHVEVKDPEDKVIL 76
Query: 338 SRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVGEHAVDYANVAQKEK 517
S++Y+ EG +FTS+TPGEHVIC+YSN+T+WF+G+QLRVHLDIQ G+HA DYA V ++ K
Sbjct: 77 SKLYTSEGRFTFTSNTPGEHVICIYSNTTAWFNGAQLRVHLDIQAGDHAQDYAQVEEERK 136
Query: 518 LTE 526
L E
Sbjct: 137 LDE 139
>Z74035-1|CAA98480.1| 204|Caenorhabditis elegans Hypothetical
protein F47G9.1 protein.
Length = 204
Score = 76.2 bits (179), Expect = 3e-14
Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Frame = +2
Query: 302 VEVRDPNDRILLSR--VYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVG 475
+ V D L R L+G +FT+ IC+ ++ + G + V L ++ G
Sbjct: 55 IHVTDTRGHTLYKRENFADLKGKFAFTADEYDIFEICIENHPPAGHPGEKREVSLILKHG 114
Query: 476 EHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWW 655
A +Y ++A+ EKL L++ +R+L D ITK+ A+ RQREE R T+ESTN RVL+
Sbjct: 115 VEAKNYDDIAKAEKLKPLEVELRRLEDMADSITKDFAFMRQREEEMRNTNESTNSRVLYL 174
Query: 656 SL 661
S+
Sbjct: 175 SI 176
>AF039713-7|AAB96722.1| 203|Caenorhabditis elegans Hypothetical
protein F57B10.5 protein.
Length = 203
Score = 58.4 bits (135), Expect = 6e-09
Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 1/174 (0%)
Frame = +2
Query: 161 FHIAXGARKCFIXXIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVRDPNDRILLS 340
F + A +CF + D + ++V +GG + + + DPN ++L
Sbjct: 22 FELPDNANQCFYEDLKKDVDTVFEFQVV-----TGGHYD------VDLIIEDPNGKVLYK 70
Query: 341 RVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVGEHAVDYANVAQ-KEK 517
I+F + G + C +SN S FS V++D Q G+ +A V Q
Sbjct: 71 DTKKQYDSINFKAEVEGTYKAC-FSNEFSTFSHKI--VYMDWQFGDQNALHAAVTQGAHA 127
Query: 518 LTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWWSLLQTGVL 679
+T+L+ + D++ I Q + R RE R+ +E N+RV+ WSL Q+ V+
Sbjct: 128 MTQLENYAVAIGDKLRTIDDYQTHHRLREATGRKRAEELNERVMIWSLGQSAVV 181
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 33.1 bits (72), Expect = 0.26
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 449 RVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ 619
++ DI E A+D+AN A ++ Q IR+ LDQ+ ++ + +++R E FR+
Sbjct: 1633 KLEADINELEIALDHANKANEDA----QKNIRRYLDQIRELQQTVDEEQKRREEFRE 1685
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 33.1 bits (72), Expect = 0.26
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 449 RVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ 619
++ DI E A+D+AN A ++ Q IR+ LDQ+ ++ + +++R E FR+
Sbjct: 1633 KLEADINELEIALDHANKANEDA----QKNIRRYLDQIRELQQTVDEEQKRREEFRE 1685
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
protein.
Length = 1947
Score = 33.1 bits (72), Expect = 0.26
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 449 RVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ 619
++ DI E A+D+AN A ++ Q IR+ LDQ+ ++ + +++R E FR+
Sbjct: 1633 KLEADINELEIALDHANKANEDA----QKNIRRYLDQIRELQQTVDEEQKRREEFRE 1685
>M37235-1|AAA28122.1| 273|Caenorhabditis elegans myosin II protein.
Length = 273
Score = 33.1 bits (72), Expect = 0.26
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 449 RVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ 619
++ DI E A+D+AN A ++ Q IR+ LDQ+ ++ + +++R E FR+
Sbjct: 133 KLEADINELEIALDHANKANEDA----QKNIRRYLDQIRELQQTVDEEQKRREEFRE 185
>AL132904-19|CAD91707.1| 371|Caenorhabditis elegans Hypothetical
protein Y111B2A.26 protein.
Length = 371
Score = 28.7 bits (61), Expect = 5.7
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = +2
Query: 443 QLRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITK-----EQAYQRQREE 607
+LR HL I V E + A V +++ TEL+ R+R+L + HQ+ + Q YQ Q
Sbjct: 42 RLREHLMI-VEETSTREA-VEAEQRETELRARVRELETKGHQVEEGASESTQQYQVQIAS 99
Query: 608 RFRQTSESTNQRVLWWSLLQTGV 676
Q N+ W +T V
Sbjct: 100 LTSQVESLQNKTTEWKKKFETEV 122
>Z34802-3|CAA84333.1| 354|Caenorhabditis elegans Hypothetical
protein M88.3 protein.
Length = 354
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -2
Query: 357 SNE*TRDNSILSFGSRTSTCMPMPGVVCMNPP 262
SNE +NS+LS S S+ +P+PG++ + PP
Sbjct: 6 SNE--TNNSLLSSASSFSSFLPVPGILELIPP 35
>U41542-2|AAR30212.1| 623|Caenorhabditis elegans Suppressor of
presenilin defectprotein 3, isoform b protein.
Length = 623
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 250 RSEIWRIHANNTGHRHAR*SPRSE**NTVVSSLFVGRNDL 369
R+ +WR N GH H + P+ E N SS F + +L
Sbjct: 193 RTRLWRYMEENFGHEHLK-QPKLESDNPSTSSSFESQTNL 231
>U41542-1|AAR30211.1| 684|Caenorhabditis elegans Suppressor of
presenilin defectprotein 3, isoform a protein.
Length = 684
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 250 RSEIWRIHANNTGHRHAR*SPRSE**NTVVSSLFVGRNDL 369
R+ +WR N GH H + P+ E N SS F + +L
Sbjct: 193 RTRLWRYMEENFGHEHLK-QPKLESDNPSTSSSFESQTNL 231
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,033,324
Number of Sequences: 27780
Number of extensions: 300896
Number of successful extensions: 876
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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