Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_H18
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr 1|||...    29   1.2  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    28   1.5  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    27   2.7  
SPBC3B9.21 |dcp1||mRNA decapping complex subunit Dcp1|Schizosacc...    26   6.2  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    26   8.2  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   8.2  
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma...    26   8.2  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    26   8.2  

>SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 252

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
 Frame = +3

Query: 357 EPHMVSIYNKYMGGVDRSDENISHYRIGIRGKKWYMPLLTHM-------IDLAEHNAWQL 515
           E  M+ IY  Y+  +++ +E+     +  R  KWY+PLL H+       I L + N   L
Sbjct: 63  EQRMI-IYKDYLC-IEKLEEDYVPGFLSFREIKWYLPLLNHIPHQFRIDIILVDGNG-VL 119

Query: 516 YKINHGKLDHLGFRRRVAIALIESN 590
           + +  G   HLG    + +  +  N
Sbjct: 120 HPVGFGLACHLGVLLNLPVVGVAKN 144


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
 Frame = +3

Query: 411 DENISHYRIGIRGKKWYMPLLTHMIDLAEHNAWQLYKI---NHGKLDHLGF--RRRVAIA 575
           +E+  +Y+IG  G +W M  L  + D+A+     + ++    +G L    F    R  + 
Sbjct: 160 NESGINYKIGDNGSRWRMMKLKRVFDMAQDQRRPVEEVALERYGSLKEFDFALEERDELE 219

Query: 576 LIESNRKNAKRGPSRPSHHEH-AD---SRKDQMN 665
           L +  RK  K  P+   + +  AD   +RKD  N
Sbjct: 220 LRKRTRKVQKEVPTGELYEKRCADEFKTRKDSGN 253


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 35/163 (21%), Positives = 70/163 (42%), Gaps = 21/163 (12%)
 Frame = +3

Query: 267 FSIASNAVGINPKQSAKRFSQSEKRNIVIEEPHMVSIYNKYMGGVDRSDENISH-YRIGI 443
           FS+ +  +G+NP + A RFS +   +  I     VS        ++ +   ++  + IG+
Sbjct: 245 FSVTAQILGLNPGELASRFSAASGHSQGIVVAAAVSASTDSASFMENAKVALTTLFWIGV 304

Query: 444 RGKKWY----MP--LLTHMIDLAEHNAWQLYKINHGKLD-----------HLGFRRRVAI 572
           R ++ +    +P  ++   +  +E N   +  +    ++           HL   R+V++
Sbjct: 305 RSQQTFPTTTLPPSVVADSLASSEGNPTPMLAVRDLPIETLNKHIETTNTHLPEDRKVSL 364

Query: 573 ALIESNRKNAKRGPSRPSHHEHADSRK---DQMNHLVIPQSKQ 692
           +L+   R     GP+R  +  +   RK   D  N   IP SK+
Sbjct: 365 SLVNGPRSFVVSGPARSLYGLNLSLRKEKADGQNQSRIPHSKR 407


>SPBC3B9.21 |dcp1||mRNA decapping complex subunit
           Dcp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 411 DENISHYRIGIRGKKWYMPLLTHMIDLAEHNAWQLYKINHGK 536
           DENI    + ++  K++ P +  +ID+A H A   + +   K
Sbjct: 3   DENILRNAVNLQVLKFHYPEIESIIDIASHVAVYQFDVGSQK 44


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +3

Query: 579 IESNRKNAKRGPSRPSHHEHADSRKDQMNHLVIPQSKQTHCRQ 707
           + S  K+     S+P     AD RKD +N+L+       + ++
Sbjct: 438 VTSKIKSTAENSSKPLSMNEADERKDGLNNLLFENKSGANTKE 480


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 407 PIHSSHIFVIDGHHMWFFY 351
           P H  H F I+    WFF+
Sbjct: 62  PYHHHHTFTIEAFFYWFFF 80


>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 597 FFCLIQSKQLLPFCESQDD 541
           F C ++SK+L+ FC+  D+
Sbjct: 175 FRCFVKSKRLIAFCQRDDN 193


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 411 DENISHYRIGIRGKKWYMPLLTHMIDLAEHNAWQLYKINH 530
           D+++ H    IRG++W    + H I L E   W+  K  H
Sbjct: 229 DDHLMHITHVIRGEEWVPSTIKH-IQLYEAFGWKPPKFAH 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,339,597
Number of Sequences: 5004
Number of extensions: 69265
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)