Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_H16
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom...    39   8e-04
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    27   4.7  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    26   6.1  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   8.1  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    26   8.1  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   8.1  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    26   8.1  

>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +3

Query: 453 DVFGFSMMKKTPDSNCSCPNCERPVSATRFAPHLEKCMG 569
           D++G S+   +     SC  C+R ++A+R+A HLEKC G
Sbjct: 57  DIYGNSVQTPSNVPYYSCLMCKREIAASRYAAHLEKCKG 95


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +3

Query: 456 VFGFSMMKKTPDSNCSCPNCERPV 527
           +FG + ++K  +++C+CP C + V
Sbjct: 130 IFGKNCLQKWLENHCTCPLCRKEV 153


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -1

Query: 573 PFPYISLSEARTSLPTPVAHNLDTSSLNLGSFSSLKIRIRHTR 445
           P P  +LS   T +PTP+      SSLN+   SS K  I H R
Sbjct: 595 PVPGRTLSPKPTRIPTPI-----PSSLNVSLESSKKPEIFHER 632


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 764 VTIVHFIWFPVIVVFNSSFPVFILH 690
           V ++  IW  +  +FN  FPVF+ +
Sbjct: 561 VKLIDNIWTVIYFIFNVPFPVFLCY 585


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 806 TAIISIIVQVTISAVTIVHFIWFPVIVVFNSSFPVFILH 690
           TA+IS  +Q     +++ +F     IV   +S P++ LH
Sbjct: 818 TAVISFFIQTAYKCLSLQNFSTLMSIVSALNSAPIYRLH 856


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -1

Query: 219 YSFSLIXLTXILRKKFDSDKFGXAFLGKDLLIKNQQXK 106
           YS   +     LRK    +KFG AF GKD   KN + K
Sbjct: 795 YSLDELMEMSDLRKGGFWEKFGKAFKGKDAEKKNVKKK 832


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 423 PYKIVNTSECDV-FGFSMMKKTPDSNCSCPNCERPVSATRFAPHL 554
           P  ++    C++ F F+M+K++   NC   N  R  S + FA  L
Sbjct: 535 PCDLMECLLCELGFLFAMLKESTGRNCQATNFLRAFSNSSFAQSL 579


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,845
Number of Sequences: 5004
Number of extensions: 46734
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)