Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_H16
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0638 - 16489181-16489210,16489486-16489806,16489878-16489919     48   8e-06
12_02_0630 + 21367620-21367695,21367890-21367976,21368287-213683...    31   1.6  
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440...    28   8.6  

>05_03_0638 - 16489181-16489210,16489486-16489806,16489878-16489919
          Length = 130

 Score = 48.4 bits (110), Expect = 8e-06
 Identities = 24/44 (54%), Positives = 26/44 (59%)
 Frame = +3

Query: 438 NTSECDVFGFSMMKKTPDSNCSCPNCERPVSATRFAPHLEKCMG 569
           N    DVFG  +     D    C NC RPV+A RFAPHLEKCMG
Sbjct: 78  NKGVVDVFGQVLPAVAADL-VDCMNCGRPVAAGRFAPHLEKCMG 120


>12_02_0630 +
           21367620-21367695,21367890-21367976,21368287-21368333,
           21368413-21368470,21369056-21369166,21369353-21369478,
           21370123-21370182,21370966-21371186,21371274-21371460,
           21371939-21372063
          Length = 365

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 432 IVNTSECDVFGFSMMKKTPDSNCSCPNCERPVSATRFAPHLEKC 563
           +++  +  +FG   M    D    C  C++P+ A+++A H E+C
Sbjct: 50  LLDEDDMHIFGSKPMADPLDL-VFCNTCKKPIKASQYAVHAERC 92


>08_01_0004 +
           39265-39440,39545-39652,41955-43528,43650-43996,
           44090-44322,45308-45412,45531-45705,46443-46658
          Length = 977

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +1

Query: 508 QIVSDR-CRQRGSRLT*RNVWEWVE 579
           Q+V+D  C+Q  S ++ R++WEW E
Sbjct: 703 QLVNDSICQQNLSNISLRSIWEWYE 727


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,346,451
Number of Sequences: 37544
Number of extensions: 282460
Number of successful extensions: 620
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)