Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_H16
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022985-13|AAB69968.1|  375|Caenorhabditis elegans Hypothetical...    31   1.4  
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    29   4.4  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    29   4.4  
U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p...    29   5.8  

>AF022985-13|AAB69968.1|  375|Caenorhabditis elegans Hypothetical
           protein T15B7.15 protein.
          Length = 375

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 243 NDLNSKFFEIMQNEDNAVEATNFIYDQL 326
           N+LNSK  E +QN D   + T+ + DQL
Sbjct: 283 NELNSKLDEALQNSDKCQKMTSLLEDQL 310


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = +3

Query: 447 ECDVFGFSMMKKTPDSNCSCPN-CE---RPVSAT 536
           EC  +G  ++K    + C CPN CE   RPV AT
Sbjct: 374 ECGFWGSCVVKPDRTAECECPNRCEDVMRPVCAT 407


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = +3

Query: 447 ECDVFGFSMMKKTPDSNCSCPN-CE---RPVSAT 536
           EC  +G  ++K    + C CPN CE   RPV AT
Sbjct: 382 ECGFWGSCVVKPDRTAECECPNRCEDVMRPVCAT 415


>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
            protein C56C10.12 protein.
          Length = 1599

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 207  MKMNTISSELSMNDLNSKFFEIMQN-EDNAVEATNFIYDQLFDDVTLG 347
            +K+ TI S L  NDL + +  I+QN ED+ V         L D VT G
Sbjct: 905  LKLPTIPSSLVQNDLTAHYVRIVQNCEDDVVVYLEKGVPLLSDLVTSG 952


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,377,683
Number of Sequences: 27780
Number of extensions: 262154
Number of successful extensions: 661
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)