Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_H15
(903 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 23 1.00
06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979 31 1.7
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.9
01_01_0482 + 3535083-3535194,3535301-3535467 30 2.9
05_01_0142 - 940421-940701,941262-941574 29 5.1
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 5.1
02_03_0120 + 15463163-15465250 29 5.1
09_02_0603 - 11150739-11150746,11150791-11151340 29 6.7
02_04_0654 - 24755339-24755408,24755488-24755624,24756243-247563... 29 6.7
02_03_0135 - 15602404-15602850,15603332-15603588,15605095-156052... 28 8.8
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 23.4 bits (48), Expect(3) = 1.00
Identities = 10/31 (32%), Positives = 10/31 (32%)
Frame = +2
Query: 323 PPPPXX*XPTKNKPXPPXXXHPXXKKKHFXP 415
PPPP P P PP P P
Sbjct: 267 PPPPQVPPPPPQAPPPPPPNAPMGMPPRIPP 297
Score = 23.4 bits (48), Expect(3) = 1.00
Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Frame = +2
Query: 494 RAPPSXKGGXXPPXP----XNXPXXGXPXP 571
R PP GG PP P N P P P
Sbjct: 294 RIPPPPVGGTQPPPPPPPLANGPPRSIPPP 323
Score = 21.4 bits (43), Expect(3) = 1.00
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = +2
Query: 689 PPPPXQGGXGXXXXPLQXNHPP 754
PPPP GG P PP
Sbjct: 321 PPPPMTGGAMANFTPGAPPRPP 342
>06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979
Length = 304
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 323 PPPPXX*XPTKNKPXPPXXXHPXXKKKHFXP 415
PPPP P K P P HP K++ P
Sbjct: 56 PPPPPPPQPAKEPPPPTKPKHPKPKQQQHPP 86
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = +2
Query: 689 PPPPXQGGXGXXXXPLQXNHPPPXARGGXXXXXRXXXXXPPPPK 820
PPPP G P + PPP GG + PPPPK
Sbjct: 345 PPPPPAKGPPPPPPPKGPSPPPPPPPGG-----KKGGPPPPPPK 383
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/43 (32%), Positives = 16/43 (37%)
Frame = +2
Query: 689 PPPPXQGGXGXXXXPLQXNHPPPXARGGXXXXXRXXXXXPPPP 817
PPPP P + PPP A+G PPPP
Sbjct: 326 PPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPP 368
>01_01_0482 + 3535083-3535194,3535301-3535467
Length = 92
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/47 (36%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Frame = +2
Query: 689 PPPPXQGGXGXXXXPLQXN-HPPPXARGGXXXXXRXXXXXPPPPKXK 826
PPPP Q G G Q PPP A PPPP K
Sbjct: 46 PPPPPQHGAGRRLLSTQNQVTPPPPAPVSSPPIGPAPTLLPPPPPAK 92
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = +2
Query: 251 QTXPPRGGGEKKXXXKYXPXGGX*PPPPXX*XPTKNKPXPPXXXHPXXKKKH 406
Q PP G Y P G PPPP P P P P +H
Sbjct: 38 QGYPPPPGAYPPPPGAYPPPPGAYPPPPGAYPPQHGYPQPGGYPPPGGYPQH 89
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.1 bits (62), Expect = 5.1
Identities = 31/118 (26%), Positives = 32/118 (27%)
Frame = +2
Query: 500 PPSXKGGXXPPXPXNXPXXGXPXPXXXXKKXFXCXXXPXXXXXKXTLXXLKKPXXHXXVX 679
PPS G PP P G P P P P
Sbjct: 1101 PPSIGAGAPPPPPPPGGITGVPPP-------------PPIGGLGGHQAPPAPPLPEG--I 1145
Query: 680 SXFPPPPXQGGXGXXXXPLQXNHPPPXARGGXXXXXRXXXXXPPPPKXKEXXFXXGRP 853
PPPP GG G P PP RGG PPPP + G P
Sbjct: 1146 GGVPPPPPVGGLGGPPAP----PPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPP 1199
>02_03_0120 + 15463163-15465250
Length = 695
Score = 29.1 bits (62), Expect = 5.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 326 PPPXX*XPTKNKPXPPXXXHPXXKKKH 406
PPP P+ P PP HP +++H
Sbjct: 301 PPPPSPSPSPPPPSPPPPPHPNHRRRH 327
>09_02_0603 - 11150739-11150746,11150791-11151340
Length = 185
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = +2
Query: 686 FPPPPXQGGXGXXXXPL-QXNHPPPXARGGXXXXXRXXXXXPPPPK 820
FPPPP G PL Q PPP G PPPP+
Sbjct: 43 FPPPPPPGST---FVPLPQSGVPPPPPLGSFFVPPPQSRVPPPPPQ 85
>02_04_0654 -
24755339-24755408,24755488-24755624,24756243-24756326,
24756929-24756944,24758035-24758405
Length = 225
Score = 28.7 bits (61), Expect = 6.7
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Frame = +2
Query: 260 PPRGGG----EKKXXXKYXPXGGX*PPPPXX*XPTKN-KPXPPXXXHPXXKKKHFXP 415
PPRGGG K+ PPPP P + +P PP HP K P
Sbjct: 9 PPRGGGTLGKRKERDRPSSEEQRAPPPPPPPLFPAMSARPQPPRPAHPARFVKPMPP 65
>02_03_0135 -
15602404-15602850,15603332-15603588,15605095-15605200,
15605500-15605630,15606159-15606223,15606345-15606409,
15606560-15606955
Length = 488
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 749 PPPXARGGXXXXXRXXXXXPPPPKXKEXXFXXGRPA 856
PPP AR G R P PP + GRP+
Sbjct: 4 PPPPARPGRRSRSRAVARGPGPPLPSKNRIIPGRPS 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,247,349
Number of Sequences: 37544
Number of extensions: 306992
Number of successful extensions: 808
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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