Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_H14
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical...    32   0.63 
U53336-10|AAA96182.2|  125|Caenorhabditis elegans Hypothetical p...    30   1.9  

>AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.10 protein.
          Length = 986

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 595 KPDRTIKIPGVSPWKLPRALSCSDPCRLPDTCPPFSLREAWRFLIA 732
           K   +I +PGV   ++    S  DPC LPD     +L E  R + A
Sbjct: 220 KNHSSIHVPGVGDMRISNVTSLPDPCPLPDEIKKRALNEKERKVYA 265


>U53336-10|AAA96182.2|  125|Caenorhabditis elegans Hypothetical
           protein K07C11.10 protein.
          Length = 125

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -2

Query: 775 LERTTYTELRYXQREL*ESATLPEGRKADRYPVSGRGRNRRAHEGAS 635
           L+  T  +L   QRE  E   +PEG+KA R P S    + +++EG S
Sbjct: 66  LKTITTQKLEKMQREQMERLQVPEGQKA-RTPESAEAESPKSNEGPS 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,526,501
Number of Sequences: 27780
Number of extensions: 319319
Number of successful extensions: 843
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)