Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_H12
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    28   2.0  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    26   6.2  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   6.2  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    26   6.2  

>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 47  ILNVIIYGICVSQCNILKNIKFKTEFTTY 133
           +L++  YG+ ++Q  ILKNI F T    Y
Sbjct: 357 LLDIAFYGVNLNQSVILKNIGFSTGTNEY 385


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +2

Query: 227 RRFLRKIVYITTAGLNLRSSRILLTSNLWAVIENLTKFNFSSTQWLADTR 376
           R+++R++V+     LNL+S      +  + ++    KF+ SS   ++ TR
Sbjct: 552 RKYVRRLVHALANDLNLKSRSYGSGNKRYTMLSKTHKFDASSVDLVSLTR 601


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = -2

Query: 561 VLRVFVLKMLFVSLRVRHLGLTNHTNMDKCLL 466
           +L +++ +ML  +LR+  +G  NHT ++KCLL
Sbjct: 418 ILWLWLFRML--NLRIASMG-NNHTLLEKCLL 446


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 47  ILNVIIYGICVSQCNILKNIKFKTEFTTY 133
           +L++  YG+ ++Q  ILKNI F +    Y
Sbjct: 358 LLDIAFYGVNLNQSVILKNIGFSSGTNEY 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,648
Number of Sequences: 5004
Number of extensions: 50583
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)