Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_H11
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...   191   1e-49
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    29   1.2  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   2.7  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    27   3.6  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    27   4.7  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    27   4.7  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    27   4.7  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    27   4.7  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    27   4.7  
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi...    26   6.3  

>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score =  191 bits (465), Expect = 1e-49
 Identities = 98/152 (64%), Positives = 115/152 (75%), Gaps = 1/152 (0%)
 Frame = +2

Query: 428 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASN 607
           MSE  +A++ +EIWKI++L+K L    GNGTSMI+LIIPP +QISR S MLA+E+GTASN
Sbjct: 1   MSE--TAEKAIEIWKIRRLVKQLINCHGNGTSMITLIIPPGEQISRYSNMLAEEYGTASN 58

Query: 608 IKSRVNRLSVLGAITSVQHRLXLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPIN 787
           IKSRVNRLSVL AITS + RL LY KVP NGLVIYCG ++ E  K +K+NIDFEPFKPIN
Sbjct: 59  IKSRVNRLSVLSAITSTRERLKLYNKVPDNGLVIYCGEVIMEGNKTRKLNIDFEPFKPIN 118

Query: 788 TSLYLCDNK-XTPRL*RHCWLMIQVXFIVMDG 880
           TS YLCDNK  T  L        +  FIVMDG
Sbjct: 119 TSQYLCDNKFHTEALAELLESDQRFGFIVMDG 150


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = +2

Query: 407 LNKKRNKMSEE--SSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKML 580
           LN+  N +S    SSAD  +E W   K I S + +R   TS  S +  P +    +   L
Sbjct: 10  LNRLNNGLSSNNGSSADEGLEHWNPLKKIHSADSSRRRSTS--SQLNQPSNY--HMHSSL 65

Query: 581 ADEFGTASNIKSRVNRL 631
            +E    S+I S  +R+
Sbjct: 66  HEEVSVGSSIASPSSRI 82


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 701 LVIYCGTIVTEEGKEKKVNIDFEPFKPIN 787
           L ++    VT+EGKEK + I  E F+ I+
Sbjct: 619 LSLWTACCVTDEGKEKNIKIAVEIFREIS 647


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
 Frame = +2

Query: 659 QHRLXLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLY---LCD-NKXTPR 826
           Q  + L   +   G+ +   T+V   G     NID+  ++P N S +   +C   +  P 
Sbjct: 120 QDLIDLADALHDRGMYLMVDTVVNHMGSSDPRNIDYGIYRPFNQSSHYHPMCPIEQDKPL 179

Query: 827 L*RHCWL 847
               CW+
Sbjct: 180 SLEQCWI 186


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = -2

Query: 427 FVSLFI*LINHKHYIC-INN*NNVF-AQHQN 341
           F + F+ L +HK+YIC + N NN++  QH +
Sbjct: 197 FSTKFVALSSHKNYICGLTNDNNLYILQHSH 227


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 537 SFHLRIKSREYQRCWLMNLVQLPISSHV 620
           S+  R   R+YQ CW+++++   +S++V
Sbjct: 2   SWFYRFFIRDYQNCWMVSIMGTGLSANV 29


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 537 SFHLRIKSREYQRCWLMNLVQLPISSHV 620
           S+  R   R+YQ CW+++++   +S++V
Sbjct: 2   SWFYRFFIRDYQNCWMVSIMGTGLSANV 29


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 537 SFHLRIKSREYQRCWLMNLVQLPISSHV 620
           S+  R   R+YQ CW+++++   +S++V
Sbjct: 2   SWFYRFFIRDYQNCWMVSIMGTGLSANV 29


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 537 SFHLRIKSREYQRCWLMNLVQLPISSHV 620
           S+  R   R+YQ CW+++++   +S++V
Sbjct: 2   SWFYRFFIRDYQNCWMVSIMGTGLSANV 29


>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
           protease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 298

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
 Frame = +2

Query: 578 LADEFGTASNIKSRVNRLSVLGAITSVQHRLXLYTKVPPNGL----VIYCGTIVTEE-GK 742
           + D FG    +   ++ +      + + HRL   TKV P  L     IY     T     
Sbjct: 149 IVDVFGNNQFVAFYISSILFSNVASLLHHRLRFGTKVTPGSLGASGAIYAIAAATSYFFP 208

Query: 743 EKKVNIDFEPFKPINTSLYL 802
              V+I F PF PI   + L
Sbjct: 209 NASVSIIFLPFIPIKIGVAL 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,572,896
Number of Sequences: 5004
Number of extensions: 73174
Number of successful extensions: 205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)