Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_H11
(890 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1085 - 23851852-23853165 224 8e-59
03_05_0830 + 28034179-28035492 223 1e-58
01_07_0127 + 41234826-41236136 217 1e-56
02_05_0629 + 30475493-30475674,30477091-30477125,30477566-304777... 30 2.1
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336... 30 2.1
08_01_0343 - 3025577-3025810,3026428-3026505,3026630-3026748,302... 30 2.8
10_01_0353 + 3882691-3882937,3883216-3883320,3883780-3883907 28 8.7
>07_03_1085 - 23851852-23853165
Length = 437
Score = 224 bits (547), Expect = 8e-59
Identities = 112/152 (73%), Positives = 123/152 (80%), Gaps = 1/152 (0%)
Frame = +2
Query: 428 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASN 607
MS+ DRN+EIWKIKKLIK+LE ARGNGTSMISLI+PP+DQI+RV+KML DE+GTASN
Sbjct: 1 MSDSHETDRNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQIARVAKMLGDEYGTASN 60
Query: 608 IKSRVNRLSVLGAITSVQHRLXLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPIN 787
IKSRVNR SVL AITS Q RL LY KVPPNGLV+Y GTIVTE+GKEKKV IDFEPFKPIN
Sbjct: 61 IKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFKPIN 120
Query: 788 TSLYLCDNK-XTPRL*RHCWLMIQVXFIVMDG 880
SLYLCDNK T L + FIVMDG
Sbjct: 121 VSLYLCDNKFHTEALNELLESDDKFGFIVMDG 152
>03_05_0830 + 28034179-28035492
Length = 437
Score = 223 bits (545), Expect = 1e-58
Identities = 111/152 (73%), Positives = 123/152 (80%), Gaps = 1/152 (0%)
Frame = +2
Query: 428 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASN 607
MS+ D+N+EIWKIKKLIK+LE ARGNGTSMISLI+PP+DQ+SRV+KML DE+GTASN
Sbjct: 1 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASN 60
Query: 608 IKSRVNRLSVLGAITSVQHRLXLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPIN 787
IKSRVNR SVL AITS Q RL LY KVPPNGLV+Y GTIVTE+GKEKKV IDFEPFKPIN
Sbjct: 61 IKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFKPIN 120
Query: 788 TSLYLCDNK-XTPRL*RHCWLMIQVXFIVMDG 880
SLYLCDNK T L + FIVMDG
Sbjct: 121 ASLYLCDNKFHTEALNELLESDDKFGFIVMDG 152
>01_07_0127 + 41234826-41236136
Length = 436
Score = 217 bits (530), Expect = 1e-56
Identities = 104/152 (68%), Positives = 122/152 (80%), Gaps = 1/152 (0%)
Frame = +2
Query: 428 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASN 607
M++ D+N+EIWK+KKLIK L+ ARGNGTSMISLI+PP+DQ+SRV+KML DE+GTASN
Sbjct: 1 MADSHETDKNIEIWKVKKLIKGLDAARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASN 60
Query: 608 IKSRVNRLSVLGAITSVQHRLXLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPIN 787
IKSRVNR SVL AITS Q RL LY +VPPNGLV+Y GTIVT+EGKEKKV +DFEPF+PIN
Sbjct: 61 IKSRVNRQSVLAAITSAQQRLKLYNRVPPNGLVLYTGTIVTDEGKEKKVTVDFEPFRPIN 120
Query: 788 TSLYLCDNK-XTPRL*RHCWLMIQVXFIVMDG 880
SLYLCDNK T L + FI+MDG
Sbjct: 121 ASLYLCDNKFHTEALNELLESDDKFGFIIMDG 152
>02_05_0629 +
30475493-30475674,30477091-30477125,30477566-30477724,
30478558-30478568,30479669-30479730,30480166-30480265,
30480495-30480770
Length = 274
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 659 QHRLXLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPIN 787
Q +L LY KV L+ C ++T K+ K +DF F+P+N
Sbjct: 203 QQKLELYNKVRCKILLETCDYMLTHYPKQLKEQLDFS-FRPVN 244
>01_01_0453 -
3361460-3361549,3361660-3361846,3362038-3362139,
3362239-3362306,3362976-3363175,3363253-3363595,
3363837-3363893,3364011-3364727,3364805-3365007,
3365171-3365297
Length = 697
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +2
Query: 377 YTNIVFVVN*LNKKRNKMSEESSADRNVEIWKIKKLIKSLE 499
Y + ++N L+KK +M E+ D + EI +KKL+K +E
Sbjct: 347 YAELYQIINDLSKKTEEM-EKMKVDSDQEILLLKKLVKVME 386
>08_01_0343 -
3025577-3025810,3026428-3026505,3026630-3026748,
3027566-3027645,3028034-3028107,3028536-3028620,
3028704-3028789,3028968-3029038,3029126-3029207,
3029490-3029531,3029552-3029584,3029699-3029794,
3030163-3030414,3030970-3031149,3032079-3032119,
3032341-3032470,3032504-3032606,3032686-3032773,
3033151-3033304,3033688-3033739,3033815-3033894,
3034478-3034789,3034886-3034955,3035033-3035100,
3035405-3035678,3036408-3036580,3037036-3037128,
3037228-3037443
Length = 1121
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +2
Query: 491 SLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIKSRVNRLSVLGAITS-VQHR 667
SLE + G G S+ + + ++ + L+ +FG ++++ + L VL +I S +Q
Sbjct: 134 SLEGSCGKGLSVRKTALDTVSECLQILRFLSKDFGGSTSLPENAHLLRVLISIVSCLQSE 193
Query: 668 LXLYTKVPPNG 700
L L K PNG
Sbjct: 194 LNLTDK--PNG 202
>10_01_0353 + 3882691-3882937,3883216-3883320,3883780-3883907
Length = 159
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +2
Query: 449 DRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLAD 586
+R++E+W+I K ++ A+ TS ISL+ +++RVS D
Sbjct: 93 ERDLEVWRISKEVQVNMEAQTKSTSRISLL----GEVNRVSTRTVD 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,512,603
Number of Sequences: 37544
Number of extensions: 448976
Number of successful extensions: 1031
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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