Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_H11
(890 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016452-11|AAB66012.1| 443|Caenorhabditis elegans Hypothetical... 231 5e-61
J05274-1|AAA27984.1| 360|Caenorhabditis elegans protein ( C.ele... 32 0.48
AF067211-13|AAC16993.1| 360|Caenorhabditis elegans Protein kina... 32 0.48
AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical ... 30 1.9
AL021497-8|CAA16409.1| 334|Caenorhabditis elegans Hypothetical ... 29 3.4
AC024799-9|AAK72312.1| 293|Caenorhabditis elegans Hypothetical ... 29 4.5
Z71186-4|CAA94916.1| 867|Caenorhabditis elegans Hypothetical pr... 28 7.8
AL132949-35|CAI70419.1| 466|Caenorhabditis elegans Hypothetical... 28 7.8
AL132949-34|CAB61101.3| 574|Caenorhabditis elegans Hypothetical... 28 7.8
>AF016452-11|AAB66012.1| 443|Caenorhabditis elegans Hypothetical
protein T05H4.6 protein.
Length = 443
Score = 231 bits (565), Expect = 5e-61
Identities = 113/149 (75%), Positives = 129/149 (86%), Gaps = 1/149 (0%)
Frame = +2
Query: 437 ESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIKS 616
+ +ADRNVE+WKIK+LIKSLE+ARGNGTSMISLIIPPKDQ++R+ +MLA+E+GTASNIKS
Sbjct: 13 DDAADRNVEMWKIKRLIKSLELARGNGTSMISLIIPPKDQVARIQRMLAEEYGTASNIKS 72
Query: 617 RVNRLSVLGAITSVQHRLXLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSL 796
RVNRLSVLGAITSVQ RL LY KVPPNGLV+YCGTI+T+EGKEKKVNIDFEPFK INTSL
Sbjct: 73 RVNRLSVLGAITSVQGRLKLYNKVPPNGLVVYCGTIMTDEGKEKKVNIDFEPFKAINTSL 132
Query: 797 YLCDNK-XTPRL*RHCWLMIQVXFIVMDG 880
YLCDNK T L + FI+MDG
Sbjct: 133 YLCDNKFHTEALQGLLADDNKFGFIIMDG 161
>J05274-1|AAA27984.1| 360|Caenorhabditis elegans protein (
C.elegans casein kinaseII-alpha gene, complete cds. ).
Length = 360
Score = 32.3 bits (70), Expect = 0.48
Identities = 22/55 (40%), Positives = 31/55 (56%)
Frame = +2
Query: 470 KIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIKSRVNRLS 634
KIK+ IK LE RG GT++I+L+ KD ISR ++ + S+ K LS
Sbjct: 76 KIKREIKILENLRG-GTNIITLLDVVKDPISRTPALIFEHVNN-SDFKQLYQTLS 128
>AF067211-13|AAC16993.1| 360|Caenorhabditis elegans Protein kinase
protein 3 protein.
Length = 360
Score = 32.3 bits (70), Expect = 0.48
Identities = 22/55 (40%), Positives = 31/55 (56%)
Frame = +2
Query: 470 KIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIKSRVNRLS 634
KIK+ IK LE RG GT++I+L+ KD ISR ++ + S+ K LS
Sbjct: 76 KIKREIKILENLRG-GTNIITLLDVVKDPISRTPALIFEHVNN-SDFKQLYQTLS 128
>AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical
protein C09E7.5 protein.
Length = 496
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +2
Query: 410 NKKRNKMSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADE 589
NKKR++ S+++ +N EI +KK + SL ++ +M S I +++ K L +
Sbjct: 124 NKKRDEASKKTLNSKNEEIEHLKKRVISLSNSQSENETMKSKI----SKLTESEKKLKET 179
Query: 590 FGTASNIKSRVN-RLSVLGA 646
G + +++++ R+S L A
Sbjct: 180 NGKVTKSRNQLSERVSELEA 199
>AL021497-8|CAA16409.1| 334|Caenorhabditis elegans Hypothetical
protein Y51A2D.12 protein.
Length = 334
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = +2
Query: 20 SLLGNSLRFCSFIFPSDGGAFVRSFVQRHLLFL*CLNFVFHMLRG----NRNKKKSKNPR 187
S G S +I + G + + F+ L+FL C N VF++L G N KK K P
Sbjct: 160 SFFGYSSTANFYIDTTYGRSNIYYFLMPALIFLTCFNIVFNVLAGIRLYNMKKKGVKVPE 219
Query: 188 T 190
T
Sbjct: 220 T 220
>AC024799-9|AAK72312.1| 293|Caenorhabditis elegans Hypothetical
protein Y49C4A.1 protein.
Length = 293
Score = 29.1 bits (62), Expect = 4.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 238 HFLVYIYVCGCSDFSSCAGILGFFLI 161
HFL+ CS+ ++C I+ FF++
Sbjct: 79 HFLIVYLALPCSNIAACRSIIAFFIV 104
>Z71186-4|CAA94916.1| 867|Caenorhabditis elegans Hypothetical
protein F23D12.5 protein.
Length = 867
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 466 MEDKETYKELGNGQRKWNIYDIPDHST*GSNLESIKDVG 582
M DK T + LGN ++ + N ES+KD+G
Sbjct: 476 MNDKNTVQRLGNAWAVFDFEGVTQLRDFAKNYESLKDIG 514
>AL132949-35|CAI70419.1| 466|Caenorhabditis elegans Hypothetical
protein Y53F4B.27b protein.
Length = 466
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +2
Query: 140 HMLRGNRNKKKSKNPRTRRKVRAT 211
H ++GN KK++K+ +TR+K R++
Sbjct: 84 HEVQGNVTKKRTKHSKTRQKARSS 107
>AL132949-34|CAB61101.3| 574|Caenorhabditis elegans Hypothetical
protein Y53F4B.27a protein.
Length = 574
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +2
Query: 140 HMLRGNRNKKKSKNPRTRRKVRAT 211
H ++GN KK++K+ +TR+K R++
Sbjct: 192 HEVQGNVTKKRTKHSKTRQKARSS 215
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,953,866
Number of Sequences: 27780
Number of extensions: 417546
Number of successful extensions: 1118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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