Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_H10
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    29   1.2  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    28   1.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.5  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    27   4.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   6.2  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   6.2  
SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...    26   8.2  

>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +2

Query: 587 EQYERLARRVE---MRFDLESTGAWSSTVELALAATRPEHRARL 709
           +Q E L RRVE   +  + E T  W   + LAL+  RP    RL
Sbjct: 628 KQAEELERRVEAEQLLSNFEQTEDWQQAIALALSLDRPHGLLRL 671


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +2

Query: 155 AELQPLSSGGANYTSLLYRARLQA---PGRPDLRLFVKVAKMSENVRAHAIN 301
           A LQ L    +N+T L  +A + A   P R D+ LF+K     ENV  H ++
Sbjct: 425 ARLQRLFEFTSNFT-LRRKANILAKHLPPRTDIVLFIKPTHQQENVYGHVLD 475


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +3

Query: 690 PSTARGCRRASPHPPXASCT-----TTPRSAAARSCTPTTGPATSCTGAT 824
           PST+  C  ++  PP  + T     T P ++ + + TP    +TS TG +
Sbjct: 333 PSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTS 382



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 693 STARGCRRASPHPPXASCTT--TPRSAAARSCTPTTGPATSCTGAT 824
           ST+  C  ++  PP  + TT  TP      S TP T   T+CT +T
Sbjct: 388 STSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLT--TTNCTTST 431



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +3

Query: 690 PSTARGCRRASPHPPXASCT-----TTPRSAAARSCTPTTGPATSCTGAT 824
           P+T+  C  ++  PP  + T     T P ++ + + TP    +TS TG +
Sbjct: 279 PTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTS 328


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 22/80 (27%), Positives = 35/80 (43%)
 Frame = +2

Query: 227  PGRPDLRLFVKVAKMSENVRAHAINSVYDTELLVYEELSKLYRALEEERGVAEPERFVFP 406
            PGRP+ R  +K+    E     A+    D  LL  +    + RALE+E  +     F+  
Sbjct: 1150 PGRPETRHKLKLVTREEIKGTVAVVCEVDGYLLSGQGQKVIVRALEDEDHLVGVS-FIDL 1208

Query: 407  ALYGARSRRLEEALVLEDLR 466
              Y   ++ L   L+  D+R
Sbjct: 1209 GSYTLSAKCLRNLLLFGDVR 1228


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +3

Query: 723  PHPPXASCTTTPRSAAARSCTPTTGPATSCT 815
            P PP A     P SAA  S  P  GP    T
Sbjct: 1884 PPPPMALPKAGPPSAAPTSALPPAGPPAGAT 1914


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
 Frame = +2

Query: 203 LYRARLQAPGRPDLRLFVKVAKMSENVRAHAINSVYDTE--LLVYEELSKLYRALE-EER 373
           LY  ++     P L L  K A MS   + + +N   D     + +E  S  YR+ + +E 
Sbjct: 681 LYALKVLKLSVPFLGLKWKQANMSIITQIY-LNCSLDLRDSWMFHENGSDTYRSAQLQET 739

Query: 374 GVAEPERFVFPALYGARSRRLEEALVLEDLR 466
            +A   RF    LYG + + L +  +LE++R
Sbjct: 740 FLAILIRFYHIRLYGKKCKSLYQFCILEEMR 770


>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 209 RARLQAP-GRPDLRLFVKVAKMSENVRAHAINSVYDTELLVY 331
           RA LQ P GR  +R F+K AK   N+R  A ++VY   +L Y
Sbjct: 61  RAGLQFPVGR--VRRFLK-AKTQNNMRVGAKSAVYSAAVLEY 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,618
Number of Sequences: 5004
Number of extensions: 33625
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)