Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_H08
         (894 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O00401 Cluster: Neural Wiskott-Aldrich syndrome protein...    34   5.6  
UniRef50_A5G0A6 Cluster: OmpA/MotB domain protein precursor; n=1...    33   7.4  
UniRef50_Q1HPW9 Cluster: Myosin regulatory light chain; n=1; Bom...    33   9.8  

>UniRef50_O00401 Cluster: Neural Wiskott-Aldrich syndrome protein;
           n=39; Eukaryota|Rep: Neural Wiskott-Aldrich syndrome
           protein - Homo sapiens (Human)
          Length = 505

 Score = 33.9 bits (74), Expect = 5.6
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -3

Query: 889 PPXLXGGNRKGPXXPXPXPRGVGDXXXPKKPXQPPP 782
           PP L      GP  P P   GVG    P  P  PPP
Sbjct: 347 PPALPSSAPSGPPPPPPSVLGVGPVAPPPPPPPPPP 382


>UniRef50_A5G0A6 Cluster: OmpA/MotB domain protein precursor; n=1;
           Acidiphilium cryptum JF-5|Rep: OmpA/MotB domain protein
           precursor - Acidiphilium cryptum (strain JF-5)
          Length = 456

 Score = 33.5 bits (73), Expect = 7.4
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -3

Query: 874 GGNRKGPXXPXPXPRGVGD-XXXPKKPXQPPP 782
           GG R  P  P P P G GD    P +P  PPP
Sbjct: 22  GGRRPPPAPPPPPPTGGGDPWSEPPRPASPPP 53


>UniRef50_Q1HPW9 Cluster: Myosin regulatory light chain; n=1; Bombyx
           mori|Rep: Myosin regulatory light chain - Bombyx mori
           (Silk moth)
          Length = 203

 Score = 33.1 bits (72), Expect = 9.8
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 871 GNRKGPXXPXPXPRGVGDXXXPKKPXQPP 785
           G  K P  P P P+ +G    PKKP  PP
Sbjct: 6   GKGKEPPKPPPGPKQIGPPPKPKKPPPPP 34


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 390,493,056
Number of Sequences: 1657284
Number of extensions: 4141775
Number of successful extensions: 10330
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9855
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 80751996367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)