Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_H07
(1079 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1687 - 35365766-35366356,35367137-35368135 33 0.30
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 31 1.2
04_03_0856 + 20336390-20336906,20337276-20337397 31 2.1
08_01_0059 - 394001-394708 27 2.8
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 29 4.8
05_01_0210 + 1583176-1584177 29 4.8
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 4.8
02_01_0302 - 2021221-2023305 29 6.4
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 8.4
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 29 8.4
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 8.4
03_01_0515 - 3864796-3865425 29 8.4
>04_04_1687 - 35365766-35366356,35367137-35368135
Length = 529
Score = 33.5 bits (73), Expect = 0.30
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +1
Query: 640 PPXRXAPXXXPPPPSXXXPPAGXLXSIXCXPPXGXXP 750
PP AP PPPP PP L + C P P
Sbjct: 4 PPAATAPPPPPPPPPPPPPPIDRLVWLACAAPLSRIP 40
>04_01_0162 +
1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 31.5 bits (68), Expect = 1.2
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 833 PXXGPPXRPRPALXXGRXXXPPPXRAXXSXAAPXAXXLPCPAAXA 967
P G P RP A G PP + + +AP A +P P A A
Sbjct: 10 PPQGVPGRPVSAFVPGAATAAPPPSSFGAASAPRAPFVPPPQAAA 54
>04_03_0856 + 20336390-20336906,20337276-20337397
Length = 212
Score = 30.7 bits (66), Expect = 2.1
Identities = 18/53 (33%), Positives = 20/53 (37%)
Frame = -1
Query: 812 PPPXXXEWXAVNTEXKKXWRGGXXPXGGXXXMXKRXPAGGXXXEGGGGXXXGA 654
PPP EW A +K GG G +R GG GGG GA
Sbjct: 36 PPP---EWPAGKLAGRKDGGGGASLEGAAAGASRRRGGGGGQIRGGGSGGGGA 85
>08_01_0059 - 394001-394708
Length = 235
Score = 26.6 bits (56), Expect(2) = 2.8
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Frame = +3
Query: 639 PXXXXRPPXPPTXXLXAXXPGXXPL----XHXXXPAXXXXXPPP 758
P RPP PPT A P PL H PA P P
Sbjct: 28 PSPPIRPPPPPTPRPYAPPPPSHPLAPPPPHISPPAPVPPPPSP 71
Score = 22.2 bits (45), Expect(2) = 2.8
Identities = 9/25 (36%), Positives = 10/25 (40%)
Frame = +3
Query: 498 AXPXQXPPPPXXGXXGEPPXXPLXP 572
A P PPP PP P+ P
Sbjct: 10 APPPPATPPPPPRRAPPPPSPPIRP 34
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 29.5 bits (63), Expect = 4.8
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = +3
Query: 456 GPGXXLLXRGXXXXAXPXQXPPPPXXGXXGEPPXXPLXP 572
GPG LL G + PPPP PP P P
Sbjct: 6 GPGAELLSPGEAEWPPELRLPPPPPPHPPPPPPLEPAPP 44
>05_01_0210 + 1583176-1584177
Length = 333
Score = 29.5 bits (63), Expect = 4.8
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 616 PXXXXLXXPPXRXAPXXXPPPPSXXXPP 699
P L PP AP PPPP PP
Sbjct: 14 PYHPLLASPPHHFAPDPLPPPPPPPPPP 41
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 29.5 bits (63), Expect = 4.8
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 643 PXRXAPXXXPPPPSXXXPPAGXLXSIXCXPPXGXXPP 753
P P PPPP PP L + PP PP
Sbjct: 345 PSNAPPPPPPPPPPPPPPPPPKLNTAPKPPPPPPPPP 381
>02_01_0302 - 2021221-2023305
Length = 694
Score = 29.1 bits (62), Expect = 6.4
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +2
Query: 644 PXVXPPXSXHXXPXGXXPRXXPSXPSXATRPXXXXPP 754
P P S + P G PS PS AT P PP
Sbjct: 424 PSYPSPSSSYPAPPGSNTPSYPSPPSSATTPSSHSPP 460
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.7 bits (61), Expect = 8.4
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = +1
Query: 616 PXXXXLXXP-PXRXAPXXXPPPPSXXXPPAGXLXSIXCXPPXGXXPP 753
P L P P AP PPPP PP+G + PP PP
Sbjct: 529 PSDRKLPSPSPTAAAP---PPPPPPPPPPSGNKPAFSPPPPPPPPPP 572
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 28.7 bits (61), Expect = 8.4
Identities = 25/89 (28%), Positives = 26/89 (29%), Gaps = 2/89 (2%)
Frame = -2
Query: 712 RGXXPGXXAXRXXVGGXGGRNXXXGXSXXXXXAXPXCXXXXAXAXXR--GXRGXXGGSPX 539
RG PG GG GGR G + G RG GG
Sbjct: 55 RGYEPGGGRGYGGGGGGGGRGYGGGGGGGGYESGGGRGYGGGGRGYESGGGRGPGGGGRG 114
Query: 538 XPXXGGGGXXXGXAXXXXPRXRRXXPGPA 452
GGGG G R R P PA
Sbjct: 115 HESGGGGG-RGGNVWAQPGRGRGGAPAPA 142
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 28.7 bits (61), Expect = 8.4
Identities = 20/65 (30%), Positives = 21/65 (32%)
Frame = +2
Query: 560 PPXAPXXRXXXXXXAXRXXPPXRX*XXXPXVXPPXSXHXXPXGXXPRXXPSXPSXATRPX 739
PP AP R PP P PP P G PR P P T+P
Sbjct: 250 PPAAPGTLPNGSGGPPRPPPPQVP--PPPPQAPPPPPPNAPMGMPPR-IPPPPVGGTQPP 306
Query: 740 XXXPP 754
PP
Sbjct: 307 PPPPP 311
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.7 bits (61), Expect = 8.4
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 498 AXPXQXPPPPXXGXXGEPPXXPLXP 572
A P PPPP PP PL P
Sbjct: 66 AGPLMPPPPPPPSVTSSPPPPPLPP 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,779,844
Number of Sequences: 37544
Number of extensions: 295574
Number of successful extensions: 2282
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1972
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3222906096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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