Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_H06
(892 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0634 - 19132916-19134033,19134716-19135915,19136002-191361... 33 0.23
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 32 0.53
08_02_0875 + 22103903-22106293 31 1.2
07_03_0632 - 20112297-20116562 31 1.2
07_03_1482 - 26864793-26865043,26865325-26865454,26865564-268657... 29 3.8
01_07_0357 + 43032552-43033034,43034054-43034383,43035210-430353... 29 3.8
09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240... 29 6.6
04_04_0555 - 26210346-26211458,26211530-26211719,26211826-262119... 29 6.6
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 29 6.6
10_07_0061 + 12489552-12489674,12490761-12490836,12490916-124909... 28 8.7
08_01_1006 - 10191817-10191822,10192449-10192745,10192826-101929... 28 8.7
07_01_0404 + 3093851-3094051,3094622-3094948,3096685-3096798,309... 28 8.7
07_01_0400 + 3048607-3048807,3049378-3049704,3051441-3051554,305... 28 8.7
07_01_0396 + 3016900-3017175,3017926-3018039,3018138-3018350,301... 28 8.7
05_07_0257 + 28719980-28720220,28721412-28721455,28722521-287225... 28 8.7
05_07_0234 - 28566846-28567766 28 8.7
03_05_0261 - 22470565-22470714,22472101-22474270,22474368-224745... 28 8.7
>09_04_0634 -
19132916-19134033,19134716-19135915,19136002-19136106,
19136273-19136315,19137622-19137740,19138074-19138172,
19138264-19138480
Length = 966
Score = 33.5 bits (73), Expect = 0.23
Identities = 12/46 (26%), Positives = 28/46 (60%)
Frame = +2
Query: 302 RDKSNSPEPMDCLSNSIITADVTSDNVEESSDSQGNKLYKIKALRK 439
++ N P++ +S +TA ++ DNVEE +++G + ++ ++ K
Sbjct: 675 KNDGNEKTPLEDISTKDMTASLSEDNVEEKKETEGTSVKEMNSILK 720
>04_04_1477 +
33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 32.3 bits (70), Expect = 0.53
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Frame = +2
Query: 194 IILKGLEPAHDLSSSDTSVTNIAAGPLDTPFRFRRKRDKSNSPEPMDCLSNSIITADVTS 373
+I K E L+ +T N+A PL+ + D S P P+ S + +
Sbjct: 537 LIEKFKEDVEKLTEPETE--NVAEQPLEVSVEQSTQTDTSREPIPLPEKPESSFDDTMDA 594
Query: 374 DNVEESSDSQGNKLYKIKALRKKC-PAFGVSLLK 472
E++S+ +G K RK C PAF + LK
Sbjct: 595 YKTEQTSEMEGKKF----MARKSCNPAFAAAQLK 624
>08_02_0875 + 22103903-22106293
Length = 796
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 412 LIPLGVAGLLDVVGRDVSSYNGVGETVHRLGAVGLV 305
L P V G + V R V+S G+ VHR G +G+V
Sbjct: 412 LDPAAVRGKIVVCDRGVNSRAAKGDVVHRAGGIGMV 447
>07_03_0632 - 20112297-20116562
Length = 1421
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +2
Query: 293 RRKRDKSNSPEPMDCLSNSIITADVTSDNVEESSDSQGNKLYKIKALRKKC 445
RR+ SP+ + + D+T DN+ +SSD N L K+ ALR C
Sbjct: 1179 RRELPLPGSPQKEEFMHTLQYLTDLTMDNLSQSSDLD-NFLCKLSALRTLC 1228
>07_03_1482 -
26864793-26865043,26865325-26865454,26865564-26865771,
26867529-26867599,26867875-26867884,26869562-26870310
Length = 472
Score = 29.5 bits (63), Expect = 3.8
Identities = 20/93 (21%), Positives = 40/93 (43%)
Frame = +2
Query: 182 CPRAIILKGLEPAHDLSSSDTSVTNIAAGPLDTPFRFRRKRDKSNSPEPMDCLSNSIITA 361
C +++ + T V I A P ++P++F S + + I+
Sbjct: 379 CEAVVVVAKGQDVQGTCKYGTRVDYILASP-NSPYKFVPGSYTVISSKGTS--DHHIVKV 435
Query: 362 DVTSDNVEESSDSQGNKLYKIKALRKKCPAFGV 460
DVT + +E+ + GN+ ++ + KKC G+
Sbjct: 436 DVTIQDKKETDEESGNQRQRVVKINKKCSKKGL 468
>01_07_0357 +
43032552-43033034,43034054-43034383,43035210-43035325,
43035589-43035679,43035790-43035860,43036202-43036258,
43036809-43036860,43037139-43037170,43037686-43037753,
43038148-43038353
Length = 501
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +2
Query: 257 IAAGPLDTPFRFRRKRDKSNSPEPMDCLSNSIITADVTSDNVEE-SSDSQG 406
IA G D RR + +PE D + SI T T N+E SSD G
Sbjct: 298 IAKGLADASGDLRRLKSSMLTPENTDLIKQSIFTLIFTLKNIESISSDISG 348
>09_06_0244 +
21822811-21823246,21823337-21823468,21823949-21824037,
21824135-21824224,21825033-21825603,21826097-21826734,
21826978-21827098,21827223-21827337,21828234-21829723,
21829830-21829901,21830151-21830196,21830413-21830515,
21830591-21830674,21831035-21831475,21831651-21831746,
21831896-21832045,21832131-21832274,21832414-21832527,
21832621-21832803,21832901-21832945,21833058-21833192
Length = 1764
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 306 SLFRRNLNGVSSGPAAMFVTLVSLDDKSCAGSKPFKIIALG 184
+ +NLN +S P ++S D ++C P KII G
Sbjct: 398 NFLEKNLNNLSRSPGPSSTRVLSNDSRACMPDVPHKIIQDG 438
>04_04_0555 -
26210346-26211458,26211530-26211719,26211826-26211960,
26212072-26212169,26212262-26212425,26213558-26214032
Length = 724
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 221 ALAPNLSR-LLPLGSFFLELELERIINFFLGMLFVMDLFCET 99
A+ NL R L+P S F+ + + I F++G F +D+F T
Sbjct: 613 AIVVNLIRDLVPKVSRFIPIPMAMAIPFYIGSYFAIDMFIGT 654
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 350 WSWRDSPSARGCWTCPFSVET*T 282
W+WR+SP++R CP T T
Sbjct: 412 WTWRESPASRAMQKCPACKRTHT 434
>10_07_0061 +
12489552-12489674,12490761-12490836,12490916-12490980,
12491089-12491166,12492156-12492236,12492813-12492974,
12493328-12493426,12493509-12494797,12495063-12495286,
12495373-12495500,12495596-12495634,12495724-12497178
Length = 1272
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +1
Query: 622 QKSYQCKKTCPSKFETNSYRKRVLNAVIRESHLETTSNVS 741
Q SY+C P+K+ + K+++ + RE H + V+
Sbjct: 763 QNSYECTLILPTKYHADLLAKQLIIRMDREGHTKADDQVA 802
>08_01_1006 -
10191817-10191822,10192449-10192745,10192826-10192975,
10194558-10195370
Length = 421
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -3
Query: 419 CRAYSLGSRWTPRRCRT*RQQL*WSWRDSPSARGCWTCPFSVET*TAC 276
C +++ RW R R L W R +PSAR W C V AC
Sbjct: 35 CLSHAWRRRWESVRYLDIR--LGWGCRGAPSARDLWRCAAPVVGFRAC 80
>07_01_0404 +
3093851-3094051,3094622-3094948,3096685-3096798,
3096897-3097109,3097975-3098151,3098270-3100091,
3100107-3100927,3101070-3101390
Length = 1331
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +2
Query: 209 LEPAHDLSSSDTSVTNIAAGPLDTPFRFRRKRDKS----NSPEPMDCLSNSIITADVTSD 376
+E HD S T+ T+ A +P F + KS + PEP++ +SN+I+ + T +
Sbjct: 595 IESDHD-SQHSTAHTSTAPESCHSP-SFIPEESKSVVAVDWPEPLEPISNAIVAEESTVE 652
Query: 377 NVEESSDSQ 403
+V+ S +
Sbjct: 653 SVDSKSTGE 661
>07_01_0400 +
3048607-3048807,3049378-3049704,3051441-3051554,
3051653-3051865,3052731-3052907,3053026-3054847,
3054863-3055683,3055826-3056146
Length = 1331
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +2
Query: 209 LEPAHDLSSSDTSVTNIAAGPLDTPFRFRRKRDKS----NSPEPMDCLSNSIITADVTSD 376
+E HD S T+ T+ A +P F + KS + PEP++ +SN+I+ + T +
Sbjct: 595 IESDHD-SQHSTAHTSTAPESCHSP-SFIPEESKSVVAVDWPEPLEPISNAIVAEESTVE 652
Query: 377 NVEESSDSQ 403
+V+ S +
Sbjct: 653 SVDSKSTGE 661
>07_01_0396 +
3016900-3017175,3017926-3018039,3018138-3018350,
3019216-3019392,3019511-3021332,3021348-3022168,
3022311-3022631
Length = 1247
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +2
Query: 209 LEPAHDLSSSDTSVTNIAAGPLDTPFRFRRKRDKS----NSPEPMDCLSNSIITADVTSD 376
+E HD S T+ T+ A +P F + KS + PEP++ +SN+I+ + T +
Sbjct: 511 IESDHD-SQHSTAHTSTAPESCHSP-SFIPEESKSVVAVDWPEPLEPISNAIVAEESTVE 568
Query: 377 NVEESSDSQ 403
+V+ S +
Sbjct: 569 SVDSKSTGE 577
>05_07_0257 +
28719980-28720220,28721412-28721455,28722521-28722590,
28722693-28722816,28723420-28724060,28725100-28725364,
28725434-28725713,28726042-28726209,28726867-28727358,
28727432-28727689
Length = 860
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 302 RDKSNSPEPMDCLSNSIITADVTSDNVEESSDSQGNK 412
R+ PE + + TADV D VEE DS NK
Sbjct: 282 REGLEVPESVATVKPGSSTADVYKDEVEEDMDSDKNK 318
>05_07_0234 - 28566846-28567766
Length = 306
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 332 DCLSNSIITADVTSDNVEESSDSQGNKLYKIKALRKKCPA 451
D L ++DVT+ VEE SDS G ++ + + PA
Sbjct: 18 DVLPAEASSSDVTTTGVEEESDSDGEFEFEFPFVSRDSPA 57
>03_05_0261 -
22470565-22470714,22472101-22474270,22474368-22474540,
22474763-22474924,22476420-22476560
Length = 931
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +2
Query: 233 SSDTSVTNIAAGPLDTPFRFR-RKRDKSNSPEPMDCLSNSIITADVTSDNVEESSDSQGN 409
S + VT I A D + DK N + L I +D + NV++S+D
Sbjct: 262 SQNPDVTEIDANSEDEQHQGDCNSEDKRNLKFNKETLGTGIFPSDFDNTNVQQSNDLVNI 321
Query: 410 KLYKIKALRK 439
L ++KAL +
Sbjct: 322 MLERLKALHE 331
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,743,359
Number of Sequences: 37544
Number of extensions: 416366
Number of successful extensions: 989
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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