Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_H06
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70857-9|AAB09174.1|  261|Caenorhabditis elegans C.elegans homeo...    31   0.84 
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ...    30   2.6  
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel...    30   2.6  
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr...    29   5.9  
AF000191-4|AAB52881.2|  362|Caenorhabditis elegans Hypothetical ...    29   5.9  

>U70857-9|AAB09174.1|  261|Caenorhabditis elegans C.elegans homeobox
           protein 33 protein.
          Length = 261

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 251 TNIAAGPLDTPFRFRRKRDKSNSPEPMDCLSN 346
           T++    +   F+ RR+RD++  PEP DCL +
Sbjct: 170 THLTVTQVSNWFKNRRQRDRAGVPEPKDCLKD 201


>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
            helicase-4 protein.
          Length = 1156

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 403  LGVAGLLDVVGRDVSSYNGVGETVHRLGAVGLVPF 299
            L +AGL  VV  D+   NG  E V+R+G  G   F
Sbjct: 1066 LNIAGLDHVVNYDMPDKNGFDEYVNRIGRTGRAGF 1100


>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line helicase
            protein 4 protein.
          Length = 1156

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 403  LGVAGLLDVVGRDVSSYNGVGETVHRLGAVGLVPF 299
            L +AGL  VV  D+   NG  E V+R+G  G   F
Sbjct: 1066 LNIAGLDHVVNYDMPDKNGFDEYVNRIGRTGRAGF 1100


>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical
           protein K10D2.3 protein.
          Length = 1425

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 79  SEPNLKNVSQNKSITNNIPRKKLIIRSNSSSRKKLPKGNN 198
           S+   +N SQN+   N +P+K  I++ N  S+   P   N
Sbjct: 43  SQKTSRNPSQNRPPMNIVPQKVTILKRNQDSQPTSPINRN 82


>AF000191-4|AAB52881.2|  362|Caenorhabditis elegans Hypothetical
           protein T23C6.5 protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
 Frame = -3

Query: 218 LAPNLSRLLPLGSFFLELELERIINFFLGMLFVMDLFCETFFRLGS------DGKRFWPF 57
           LA  +  L+ L  FF +  +  + NFFL  L V DLF   F  L +       G   WPF
Sbjct: 25  LATIIGNLIILLVFFSQKRVRSVPNFFLANLTVADLFVGIFCVLQNAVNFVFQGHGRWPF 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,175,701
Number of Sequences: 27780
Number of extensions: 372529
Number of successful extensions: 1001
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)