Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_H04
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 213 2e-56
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz... 129 6e-31
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces... 89 8e-19
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po... 28 2.0
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 28 2.0
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 2.7
SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38 |... 27 4.7
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 26 6.1
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 8.1
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 26 8.1
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 213 bits (521), Expect = 2e-56
Identities = 114/266 (42%), Positives = 163/266 (61%), Gaps = 4/266 (1%)
Frame = +1
Query: 85 AKFLEVEETCVYSYGFSTIASAIPSYAKRKDIVFVDECVWFAIQKGLDASRSKICYFKHN 264
A F+ VE VY+ F TI+S IP+++KR DI+ VDE FAIQKG+ SR+ I YFKHN
Sbjct: 182 ASFIGVERAIVYAQSFQTISSVIPAFSKRGDILVVDEACNFAIQKGIQISRTTIRYFKHN 241
Query: 265 DMNDLERQLLEASEKKELNSR--RRAFLIVEAIYLNTGKMCPLVRAVELARKFKLRIILD 438
+M DLER L E + ++R R F+I E I N G M L + V L +K+K R+ILD
Sbjct: 242 NMKDLERILQELEDDFVKHNRPLTRRFIITEGISENYGDMVDLTKIVALKKKYKYRLILD 301
Query: 439 ESLSIGVLGKHGRGITEYLNIPRDEIDLIVGSLEHSFATIGGFCAGTHFIVEHQRLSGLG 618
E+ S G G+ G+G+TE+ +P ++++I+GSL S A GGFCAG+ +VEHQRLSG+
Sbjct: 302 ETWSFGTCGRTGKGLTEHFGVPPTDVEIIIGSLTTSLAGGGGFCAGSELMVEHQRLSGMA 361
Query: 619 YCFSASLPPMLTQAAISALDIL-EEKPSIIEELNDRSKMMNKALAKLDHYRYSGDEISPI 795
Y +SA+LP L AA A+ IL + S++ +L +S + + L++ + S D SPI
Sbjct: 362 YIYSAALPASLAVAAYEAISILSRDGGSMLNDLRSKSALFHAKLSRNKFFETSSDIESPI 421
Query: 796 KHVYLKD-DLTDRLKHSYLRNIAAYC 870
H+ KD D++ + L I C
Sbjct: 422 IHLRFKDKDISHDKQVFLLEEIVELC 447
>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 129 bits (311), Expect = 6e-31
Identities = 76/246 (30%), Positives = 126/246 (51%), Gaps = 9/246 (3%)
Frame = +1
Query: 85 AKFLEVEETCVYSYGFSTIASAIPSYAKRKDIVFVDECVWFAIQKGLDASRSKICYFKHN 264
A F+ V+S GFST A+ + ++ DE +I+ G S + I +KHN
Sbjct: 243 ANFVGKPAALVFSQGFSTNATVFSTLMCPGSLIISDELNHTSIRFGARLSGANIRVYKHN 302
Query: 265 DMNDLERQLLEASEKKELNSRR---RAFLIVEAIYLNTGKMCPLVRAVELARKFKLRIIL 435
DM DLER L E + + + R + +++E +Y G C L + VEL ++K + +
Sbjct: 303 DMTDLERVLREVISQGQPRTHRPYSKILVVIEGLYSMEGNFCDLPKVVELKNRYKFYLFI 362
Query: 436 DESLSIGVLGKHGRGITEYLNIPRDEIDLIVGSLEHSFATIGGFCAGTHFIVEHQRLSGL 615
DE+ SIG +G G GI +Y I D +D+++G+ SF GG+ + T I+ R++
Sbjct: 363 DEAHSIGAIGPRGGGICDYFGISTDHVDILMGTFTKSFGAAGGYISATPNIINKLRVTNP 422
Query: 616 GYCFSASL-PPMLTQAAISALDILEEKPSI-----IEELNDRSKMMNKALAKLDHYRYSG 777
GY ++ S+ P +L Q S L+I++ P+ IE L S+ + L +L +
Sbjct: 423 GYVYAESMSPAVLAQIKSSFLEIMDNSPTSAGLERIERLAFNSRYIRLGLKRLGFIIFGN 482
Query: 778 DEISPI 795
D+ SP+
Sbjct: 483 DD-SPV 487
>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 89.0 bits (211), Expect = 8e-19
Identities = 56/183 (30%), Positives = 92/183 (50%)
Frame = +1
Query: 178 IVFVDECVWFAIQKGLDASRSKICYFKHNDMNDLERQLLEASEKKELNSRRRAFLIVEAI 357
I DE ++ G+ SR + FKHND+ DLE +L L R + E++
Sbjct: 262 IFLSDEMNHASMINGIRNSRCEKIIFKHNDLVDLEAKLAS------LPLNRPKIIAFESV 315
Query: 358 YLNTGKMCPLVRAVELARKFKLRIILDESLSIGVLGKHGRGITEYLNIPRDEIDLIVGSL 537
Y +G + P+ +LA+K+ LDE ++G+ G G G+ E +D+I G+L
Sbjct: 316 YSMSGNVAPISEICDLAKKYGAITFLDEVHAVGMYGPRGAGVAEETPGLLSRVDIITGTL 375
Query: 538 EHSFATIGGFCAGTHFIVEHQRLSGLGYCFSASLPPMLTQAAISALDILEEKPSIIEELN 717
S+ +GG+ A + +V+ R G+ F+ SLPP + A++A++ L K S +E
Sbjct: 376 AKSYGCVGGYIAASSTLVDMIRSLAPGFIFTTSLPPHVMVGALTAVEHL--KVSNVEREQ 433
Query: 718 DRS 726
RS
Sbjct: 434 QRS 436
>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 434
Score = 27.9 bits (59), Expect = 2.0
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +1
Query: 628 SASLPPMLTQAAISALDILEEKPSIIEELNDRSKMMNKALAKLDHYRYSGDEISP 792
S LP L Q +S IL + + LN+ + + KA ++ Y+GD I+P
Sbjct: 299 SRFLPMCLAQQDLSPSSILFSTTNTTD-LNNWEEQVEKACRVFQYFFYNGDAIAP 352
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 238 SKICYFKHNDMNDLERQLLEASEKKELNSR 327
SKI H D N +E+ LLE E K+LN +
Sbjct: 325 SKIAVDFHIDENFIEKNLLEIIEAKKLNGK 354
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 226 DASRSKICYF-KHNDMNDLERQLLEASEKKE 315
D R + YF K ND+ LER ++ AS KE
Sbjct: 2184 DFKRMEKLYFEKKNDIQQLERSIVNASNMKE 2214
>SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 634 SLPPMLTQAAISALDILEEKPSIIEELNDRSKMMNK 741
SLPP+ ++ + LD+LE S +E +D + ++K
Sbjct: 163 SLPPLRSRLQLEDLDLLEPLSSSSDEEDDDEEQISK 198
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 26.2 bits (55), Expect = 6.1
Identities = 19/71 (26%), Positives = 28/71 (39%)
Frame = +3
Query: 465 QTWSRYYRISEHSSG*NRSHCWFTGALVCYNWWLLCRYTFHRRTSEIIRTGVLLQCIFTA 644
+T+S Y++ + S WFT LV L + T T L+C
Sbjct: 308 KTFSNLYKVLSETEKTRDSKVWFTFRLVLKTKPLYASESEFYETKLNFFT-FPLECAINF 366
Query: 645 HVDSSCHFSFR 677
H+D SC +R
Sbjct: 367 HIDCSCFDDWR 377
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/48 (25%), Positives = 29/48 (60%)
Frame = +1
Query: 292 LEASEKKELNSRRRAFLIVEAIYLNTGKMCPLVRAVELARKFKLRIIL 435
+E S +++NS+ R +++ + +N+GKM L + + R+ R+++
Sbjct: 664 VEESWMQKINSQGRRDEVLKGLIMNSGKMVLLDKLLSRLRRDGHRVLI 711
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 448 SIGVLGKHGRGITEYLNIP 504
S+GVL +GI+E +NIP
Sbjct: 481 SLGVLNNSDKGISELINIP 499
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,355,225
Number of Sequences: 5004
Number of extensions: 69876
Number of successful extensions: 205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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