Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_H02
         (1193 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5KRM5 Cluster: Putative uncharacterized protein; n=1; ...    45   0.003
UniRef50_A4TTL3 Cluster: Putative uncharacterized protein; n=2; ...    39   0.22 

>UniRef50_A5KRM5 Cluster: Putative uncharacterized protein; n=1;
            Ruminococcus torques ATCC 27756|Rep: Putative
            uncharacterized protein - Ruminococcus torques ATCC 27756
          Length = 159

 Score = 45.2 bits (102), Expect = 0.003
 Identities = 40/117 (34%), Positives = 40/117 (34%)
 Frame = -2

Query: 1096 FFFFFXXKKKKXXXXXXXXXXXXXXXXXFFFFXXXGGGGXXPPXXXXXXXXXXXXXKXFF 917
            FFFFF  KKKK                 FFF    GGG   PP               FF
Sbjct: 32   FFFFFFSKKKKKRGCLFFFFFFPRGEKIFFF----GGGAPPPPPPLKKKKKI------FF 81

Query: 916  FFFXXXXPXXXXXXGXGGXKKXFFXFXPPXXXKKKKKXFFXXXXPXFFFXXRGGGXF 746
            FFF           G GG    FF F PP         FF      FFF  RGGG F
Sbjct: 82   FFFKKRG-------GGGG----FFFFFPPPQQNPPPFFFFFLGFFLFFFKKRGGGGF 127



 Score = 40.3 bits (90), Expect = 0.096
 Identities = 31/90 (34%), Positives = 31/90 (34%)
 Frame = -2

Query: 1006 FFXXXGGGGXXPPXXXXXXXXXXXXXKXFFFFFXXXXPXXXXXXGXGGXKKXFFXFXPPX 827
            FF   GGGG  P                 FFFF           G G          PP 
Sbjct: 19   FFVGCGGGGGGPLFFFFFFSKKKKKRGCLFFFFFFPRGEKIFFFGGGAPP-------PPP 71

Query: 826  XXKKKKKXFFXXXXPXFFFXXRGGGXFXFF 737
              KKKKK FF      FFF  RGGG   FF
Sbjct: 72   PLKKKKKIFF------FFFKKRGGGGGFFF 95



 Score = 34.3 bits (75), Expect = 6.3
 Identities = 19/39 (48%), Positives = 19/39 (48%)
 Frame = +3

Query: 753 PPPLXXKKXXGXXXXKKXFFFFFXXXGGXXKKXFFFXPP 869
           PPP   KK       KK FFFFF   GG     FFF PP
Sbjct: 68  PPPPPLKKK------KKIFFFFFKKRGGGGGFFFFFPPP 100


>UniRef50_A4TTL3 Cluster: Putative uncharacterized protein; n=2;
            cellular organisms|Rep: Putative uncharacterized protein
            - Magnetospirillum gryphiswaldense
          Length = 374

 Score = 39.1 bits (87), Expect = 0.22
 Identities = 34/95 (35%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
 Frame = -1

Query: 1013 FFFFXXXG--GGGXXXPXXXXXXXXXXXXXKXIFFF--FXXXXPPXXXXXGXXGXKKKXF 846
            FFFF   G  GGG   P                FFF  F    PP     G    KKK  
Sbjct: 31   FFFFLGGGREGGGGAPPPPPARRQK-------FFFFPHFFFPPPPRRGGGGVFFYKKKRG 83

Query: 845  FXSPPXXXKKKKKXFFXXXXPPXFF-XXKGGGXXF 744
               PP   +KKK  FF    PP F+    GGG  F
Sbjct: 84   GPPPPPTTQKKKNFFFSPPPPPSFWGXFFGGGGGF 118



 Score = 33.9 bits (74), Expect = 8.4
 Identities = 43/137 (31%), Positives = 45/137 (32%), Gaps = 6/137 (4%)
 Frame = -2

Query: 1138 GGXXXXPPPXXKKXFFFFFXXKKKKXXXXXXXXXXXXXXXXXFFFFXXXG--GGGXXPPX 965
            GG    PPP  KK        KKKK                 FFFF   G  GGG  PP 
Sbjct: 2    GGERNPPPPPPKKK-------KKKKGRGGGGAHPHL------FFFFLGGGREGGGGAPPP 48

Query: 964  XXXXXXXXXXXXKXFFFF--FXXXXPXXXXXXGXGGXKKXFFXFXPPXXXKKKKKXFFXX 791
                          FFFF  F    P      G    KK      PP   +KKK  FF  
Sbjct: 49   PPARRQK-------FFFFPHFFFPPPPRRGGGGVFFYKKKRGGPPPPPTTQKKKNFFFSP 101

Query: 790  XXPXFFF--XXRGGGXF 746
              P  F+     GGG F
Sbjct: 102  PPPPSFWGXFFGGGGGF 118


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 622,746,124
Number of Sequences: 1657284
Number of extensions: 7790782
Number of successful extensions: 4950
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4410
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 119945242685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)