Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_H01
(874 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 45 2e-05
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 27 2.6
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 27 3.5
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 27 4.6
SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce... 26 6.1
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce... 26 6.1
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 26 6.1
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 26 6.1
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 26 8.1
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 26 8.1
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 44.8 bits (101), Expect = 2e-05
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +1
Query: 283 KCPLCGLHRLLVIQCYAPLE-NSVYHRTLYVFACINPNCWIQSESWLCLR 429
KC C L++QCYAPLE +++ R LYV+ C NP+C S +C+R
Sbjct: 50 KCGNCKNLCRLLLQCYAPLEGDNLKERALYVWGCHNPSCRRVPNSIVCVR 99
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 529 DENDNDDSANGNLM-SVDNDPSPNNVVQRISDEDEESIPMNSKL 657
+E + D S +GN+ ++ DP P NV DE S +S L
Sbjct: 30 EEMEEDGSESGNIQKTLLEDPCPENVNDENEDEQNRSSRSSSPL 73
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 577 DNDPSPNNVVQRISDED-EESIPMNS 651
+ND SPN +++ D D EES+ M +
Sbjct: 376 ENDQSPNEATEKLRDNDLEESLKMRT 401
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 26.6 bits (56), Expect = 4.6
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 517 ADEWDENDNDDSANGNLMSVDNDP---SPNNVVQRISDEDEESIP 642
ADE DE D+D + + +S D D P+ VQ + +E IP
Sbjct: 241 ADEEDEEDSDVELSESSLSDDEDSPLRCPSTPVQTAAAPNESQIP 285
>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 339
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 421 ITSFLIGSSNWD*CRQKHIKFGGKQNFPKEHSIV 320
+T FLIG + + + F GK NF K H+ +
Sbjct: 46 MTDFLIGQLSRKEMKSMLLTFAGKSNFDKLHNSI 79
>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 459
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 223 STKLVVSLIGHRLENFQYSFKCPLCG 300
+TKL++++I + E SF+CP CG
Sbjct: 46 TTKLLLTVIPYFREVVLMSFECPHCG 71
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 376 ACINPNCWIQSESWLCLRMQYEDKKTKEA 462
A IN IQS+ W C+R ++ D K+A
Sbjct: 402 ATINHVTKIQSQYWRCMRPKHFDANPKDA 430
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 511 SGADEWDENDNDDSANGNLMSVDNDPSPNNVVQRISDED 627
+G E ++ +D S + + S ND SP+N + +D+D
Sbjct: 378 NGIQEDSQSTDDSSKDDDNNSESNDMSPHNDAETRADDD 416
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +1
Query: 490 ETNLSWCSGADEWDENDNDDSANGNLMSVDNDPSPNNVVQRISDE 624
E SW + +E+DN+ + S + D + NN + DE
Sbjct: 231 EEIFSWGDERSDEEESDNEQVNDEKKQSSEEDTTENNSAAEVIDE 275
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 598 NVVQRISDEDEESIPMNSKLSNKP 669
NV I D+DEES +N K + P
Sbjct: 924 NVESEIEDQDEESSDLNGKRRSTP 947
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,904
Number of Sequences: 5004
Number of extensions: 55074
Number of successful extensions: 192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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