Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_G23
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    33   0.27 
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    33   0.27 
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    32   0.48 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    32   0.48 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    32   0.48 
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 18/52 (34%), Positives = 18/52 (34%)
 Frame = +1

Query: 601 PPPXXKKXXXXXXPPPXPLKKKXXXXPPPXXLFXXGPPXGXXXXGXPXXPPP 756
           PPP          PPP P        PPP      GPP      G P  PPP
Sbjct: 274 PPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPP---GMPGMPPPPPP 322


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 18/52 (34%), Positives = 18/52 (34%)
 Frame = +1

Query: 601 PPPXXKKXXXXXXPPPXPLKKKXXXXPPPXXLFXXGPPXGXXXXGXPXXPPP 756
           PPP          PPP P        PPP      GPP      G P  PPP
Sbjct: 284 PPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPP---GMPGMPPPPPP 332


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 18/52 (34%), Positives = 18/52 (34%)
 Frame = +1

Query: 601 PPPXXKKXXXXXXPPPXPLKKKXXXXPPPXXLFXXGPPXGXXXXGXPXXPPP 756
           PPP          PPP P        PPP       PP G    G P  PPP
Sbjct: 745 PPPPGGLPPISGGPPPPPPPPGGCPPPPPP------PPPGGFKGGPPPPPPP 790


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 18/52 (34%), Positives = 18/52 (34%)
 Frame = +1

Query: 601 PPPXXKKXXXXXXPPPXPLKKKXXXXPPPXXLFXXGPPXGXXXXGXPXXPPP 756
           PPP          PPP P        PPP       PP G    G P  PPP
Sbjct: 745 PPPPGGLPPISGGPPPPPPPPGGCPPPPPP------PPPGGFKGGPPPPPPP 790


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 18/52 (34%), Positives = 18/52 (34%)
 Frame = +1

Query: 601 PPPXXKKXXXXXXPPPXPLKKKXXXXPPPXXLFXXGPPXGXXXXGXPXXPPP 756
           PPP          PPP P        PPP       PP G    G P  PPP
Sbjct: 328 PPPPGGLPPISGGPPPPPPPPGGCPPPPPP------PPPGGFKGGPPPPPPP 373


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
 Frame = +3

Query: 603 PPPXXKXFXXXXXPP---PPPKKKXXXXSPPXXSFXXGAPXXXKXXGXXXPPPP 755
           PPP    F      P   PPP        PP      G P      G   PPPP
Sbjct: 66  PPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPP 119


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/51 (27%), Positives = 15/51 (29%)
 Frame = +3

Query: 603  PPPXXKXFXXXXXPPPPPKKKXXXXSPPXXSFXXGAPXXXKXXGXXXPPPP 755
            PPP          PPPPP       +P         P          PPPP
Sbjct: 1343 PPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPPPPLFSPSMILPPPP 1393


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.146    0.483 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,242,241
Number of Sequences: 27780
Number of extensions: 312281
Number of successful extensions: 752
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)