Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_G22
(1097 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.27
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.27
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.27
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 33 0.48
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 32 0.63
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.5
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.9
U21308-11|AAB93312.3| 265|Caenorhabditis elegans Roller: helica... 30 2.5
U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helica... 30 2.5
M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein. 30 2.5
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 30 3.4
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 29 7.8
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.5 bits (73), Expect = 0.27
Identities = 23/87 (26%), Positives = 27/87 (31%)
Frame = +2
Query: 467 PXKXXXXTPPRPGHTIPRXVXGGGXRXQXXRXGRXPXXXXXXXGPPPPQXRXXTRXXPPA 646
P +PP P P G P PPPP+ T PP
Sbjct: 256 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 315
Query: 647 XXXXTPXPXGAGGXVLSXGPXPPRRXR 727
+P P G G P PPR+ R
Sbjct: 316 QAGGSPPPAGTGSP-----PPPPRQKR 337
Score = 30.3 bits (65), Expect = 2.5
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = -2
Query: 361 GGPPPPXXEXGDPPL*KXCGVGXKXXXYGXGXPHRXGXPP 242
G PPPP G PPL G G P R G PP
Sbjct: 235 GSPPPPPPPKGSPPL-AGSGSPPPPPAAGSPPPPRTGSPP 273
Score = 29.1 bits (62), Expect = 5.9
Identities = 18/47 (38%), Positives = 19/47 (40%)
Frame = +1
Query: 955 SPPLXACXXXPPPXPPXGAXPHPXSRXASXXXPXRXXXPETPXXAPP 1095
SPPL A PPP P G+ P P R S P P P P
Sbjct: 246 SPPL-AGSGSPPPPPAAGSPPPP--RTGSPPPPPTGSPPPPPAGGSP 289
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.5 bits (73), Expect = 0.27
Identities = 23/87 (26%), Positives = 27/87 (31%)
Frame = +2
Query: 467 PXKXXXXTPPRPGHTIPRXVXGGGXRXQXXRXGRXPXXXXXXXGPPPPQXRXXTRXXPPA 646
P +PP P P G P PPPP+ T PP
Sbjct: 277 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 336
Query: 647 XXXXTPXPXGAGGXVLSXGPXPPRRXR 727
+P P G G P PPR+ R
Sbjct: 337 QAGGSPPPAGTGSP-----PPPPRQKR 358
Score = 30.3 bits (65), Expect = 2.5
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = -2
Query: 361 GGPPPPXXEXGDPPL*KXCGVGXKXXXYGXGXPHRXGXPP 242
G PPPP G PPL G G P R G PP
Sbjct: 256 GSPPPPPPPKGSPPL-AGSGSPPPPPAAGSPPPPRTGSPP 294
Score = 29.1 bits (62), Expect = 5.9
Identities = 18/47 (38%), Positives = 19/47 (40%)
Frame = +1
Query: 955 SPPLXACXXXPPPXPPXGAXPHPXSRXASXXXPXRXXXPETPXXAPP 1095
SPPL A PPP P G+ P P R S P P P P
Sbjct: 267 SPPL-AGSGSPPPPPAAGSPPPP--RTGSPPPPPTGSPPPPPAGGSP 310
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.5 bits (73), Expect = 0.27
Identities = 23/87 (26%), Positives = 27/87 (31%)
Frame = +2
Query: 467 PXKXXXXTPPRPGHTIPRXVXGGGXRXQXXRXGRXPXXXXXXXGPPPPQXRXXTRXXPPA 646
P +PP P P G P PPPP+ T PP
Sbjct: 262 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 321
Query: 647 XXXXTPXPXGAGGXVLSXGPXPPRRXR 727
+P P G G P PPR+ R
Sbjct: 322 QAGGSPPPAGTGSP-----PPPPRQKR 343
Score = 30.3 bits (65), Expect = 2.5
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = -2
Query: 361 GGPPPPXXEXGDPPL*KXCGVGXKXXXYGXGXPHRXGXPP 242
G PPPP G PPL G G P R G PP
Sbjct: 241 GSPPPPPPPKGSPPL-AGSGSPPPPPAAGSPPPPRTGSPP 279
Score = 29.1 bits (62), Expect = 5.9
Identities = 18/47 (38%), Positives = 19/47 (40%)
Frame = +1
Query: 955 SPPLXACXXXPPPXPPXGAXPHPXSRXASXXXPXRXXXPETPXXAPP 1095
SPPL A PPP P G+ P P R S P P P P
Sbjct: 252 SPPL-AGSGSPPPPPAAGSPPPP--RTGSPPPPPTGSPPPPPAGGSP 295
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical protein
T28C6.1 protein.
Length = 281
Score = 32.7 bits (71), Expect = 0.48
Identities = 16/48 (33%), Positives = 18/48 (37%)
Frame = -1
Query: 1094 GGAXXGVSGXXXRXGXXXEAXRXXGWGXAPXGGXGGGXXXHAXRGGER 951
GG G SG G + GWG GG GG RGG +
Sbjct: 157 GGGGRGGSGGQGGWGGSQDGGSQGGWGGQNGGGQGGNQGGGGGRGGNQ 204
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 32.3 bits (70), Expect = 0.63
Identities = 23/76 (30%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Frame = +2
Query: 494 PRPGHTIPRXVXGGGXRXQXXRXGRXPXXXXXXXG-PPPPQXRXXTRXXPPAXXXXTPXP 670
P+P IP V G G P G PPPP PP P P
Sbjct: 59 PKPSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPP 118
Query: 671 XGAGGXVLSXGPXPPR 718
+G L P PPR
Sbjct: 119 PPSG---LGVAPQPPR 131
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.5
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Frame = -1
Query: 392 GXAXXXXPXXGRPPPXPXRX---GGPPPIKXXRGXXQXFXXWRGXPPPXGGXP 243
G + P G PPP P GGPPP G PPP GG P
Sbjct: 701 GGSSALPPITGGPPPPPGLPPITGGPPP-PPPPGGLPPITGGPPPPPPPGGLP 752
Score = 28.7 bits (61), Expect = 7.8
Identities = 17/49 (34%), Positives = 18/49 (36%)
Frame = +1
Query: 949 GRSPPLXACXXXPPPXPPXGAXPHPXSRXASXXXPXRXXXPETPXXAPP 1095
G PP+ PPP PP G P P S P P P PP
Sbjct: 733 GGLPPITG---GPPPPPPPGGLP-PISGGPPPPPPPPGGCPPPPPPPPP 777
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.5
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Frame = -1
Query: 392 GXAXXXXPXXGRPPPXPXRX---GGPPPIKXXRGXXQXFXXWRGXPPPXGGXP 243
G + P G PPP P GGPPP G PPP GG P
Sbjct: 701 GGSSALPPITGGPPPPPGLPPITGGPPP-PPPPGGLPPITGGPPPPPPPGGLP 752
Score = 28.7 bits (61), Expect = 7.8
Identities = 17/49 (34%), Positives = 18/49 (36%)
Frame = +1
Query: 949 GRSPPLXACXXXPPPXPPXGAXPHPXSRXASXXXPXRXXXPETPXXAPP 1095
G PP+ PPP PP G P P S P P P PP
Sbjct: 733 GGLPPITG---GPPPPPPPGGLP-PISGGPPPPPPPPGGCPPPPPPPPP 777
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.5
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Frame = -1
Query: 392 GXAXXXXPXXGRPPPXPXRX---GGPPPIKXXRGXXQXFXXWRGXPPPXGGXP 243
G + P G PPP P GGPPP G PPP GG P
Sbjct: 284 GGSSALPPITGGPPPPPGLPPITGGPPP-PPPPGGLPPITGGPPPPPPPGGLP 335
Score = 28.7 bits (61), Expect = 7.8
Identities = 17/49 (34%), Positives = 18/49 (36%)
Frame = +1
Query: 949 GRSPPLXACXXXPPPXPPXGAXPHPXSRXASXXXPXRXXXPETPXXAPP 1095
G PP+ PPP PP G P P S P P P PP
Sbjct: 316 GGLPPITG---GPPPPPPPGGLP-PISGGPPPPPPPPGGCPPPPPPPPP 360
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.9
Identities = 19/53 (35%), Positives = 20/53 (37%)
Frame = +2
Query: 599 PPPPQXRXXTRXXPPAXXXXTPXPXGAGGXVLSXGPXPPRRXRXXGVDVGXPP 757
PPPP PP TP P G G P PP R G+ G PP
Sbjct: 287 PPPPPSSGMWPPPPPPPPGRTPGPPGMPG---MPPPPPPSRFGPPGMG-GMPP 335
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 1.9
Identities = 19/53 (35%), Positives = 20/53 (37%)
Frame = +2
Query: 599 PPPPQXRXXTRXXPPAXXXXTPXPXGAGGXVLSXGPXPPRRXRXXGVDVGXPP 757
PPPP PP TP P G G P PP R G+ G PP
Sbjct: 297 PPPPPSSGMWPPPPPPPPGRTPGPPGMPG---MPPPPPPSRFGPPGMG-GMPP 345
>U21308-11|AAB93312.3| 265|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 8, isoform b
protein.
Length = 265
Score = 30.3 bits (65), Expect = 2.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 405 GXRGXPGPXXRAXXXEAPPXPXXXGGTPPYKNXAG 301
G +G PGP ++ + PP P GTP ++ AG
Sbjct: 204 GPKGNPGPDGQSY--QGPPGPPGDSGTPGHEGRAG 236
>U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 8, isoform a
protein.
Length = 329
Score = 30.3 bits (65), Expect = 2.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 405 GXRGXPGPXXRAXXXEAPPXPXXXGGTPPYKNXAG 301
G +G PGP ++ + PP P GTP ++ AG
Sbjct: 268 GPKGNPGPDGQSY--QGPPGPPGDSGTPGHEGRAG 300
>M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein.
Length = 329
Score = 30.3 bits (65), Expect = 2.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 405 GXRGXPGPXXRAXXXEAPPXPXXXGGTPPYKNXAG 301
G +G PGP ++ + PP P GTP ++ AG
Sbjct: 268 GPKGNPGPDGQSY--QGPPGPPGDSGTPGHEGRAG 300
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.9 bits (64), Expect = 3.4
Identities = 13/42 (30%), Positives = 15/42 (35%)
Frame = +1
Query: 970 ACXXXPPPXPPXGAXPHPXSRXASXXXPXRXXXPETPXXAPP 1095
A PP PP PH R ++ P R P PP
Sbjct: 503 AAQKSPPTPPPPAPGPHKEQRRSTSKDPPRPAPPPVSSIPPP 544
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical protein
F58E10.3a protein.
Length = 561
Score = 29.5 bits (63), Expect = 4.4
Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Frame = -1
Query: 1094 GGAXXGVSGXXXRXGXXX-EAXRXXGWGXAPXGGXGGGXXXHAXRGGER 951
GG+ G G G R G+G GG GGG RGG R
Sbjct: 18 GGSRGGYGGGGRGGGGGGYSGGRGGGYGGGGGGGYGGGGYGGGGRGGGR 66
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 28.7 bits (61), Expect = 7.8
Identities = 18/67 (26%), Positives = 20/67 (29%)
Frame = -3
Query: 405 GXRGXPGPXXRAXXXEAPPXPXXXGGTPPYKNXAGXXANXXXMAXXPPTAXGXPHFFXXP 226
G G PG + PP P G P AG PP G P
Sbjct: 223 GNPGAPGAVTEVPGQQGPPGPPGPAGPPGPAGNAGQAGYAQPGPAGPPGDAGPDGAPGNP 282
Query: 225 GRXGFXG 205
G+ G G
Sbjct: 283 GQPGAPG 289
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,887,781
Number of Sequences: 27780
Number of extensions: 375374
Number of successful extensions: 1675
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1413
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2960813354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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