Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_G21
(881 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z97054-10|CAI42654.1| 4374|Homo sapiens upstream regulatory elem... 33 1.4
Z94044-4|CAI42354.1| 4374|Homo sapiens upstream regulatory eleme... 33 1.4
Z94044-3|CAI42353.1| 1672|Homo sapiens upstream regulatory eleme... 33 1.4
DQ097177-1|AAY98258.1| 4374|Homo sapiens Mcl-1 ubiquitin ligase ... 33 1.4
AY929612-1|AAX24125.1| 4374|Homo sapiens LASU1 protein. 33 1.4
AY772009-1|AAV90838.1| 4374|Homo sapiens ARF-binding protein 1 p... 33 1.4
AL592046-3|CAI39580.1| 4374|Homo sapiens upstream regulatory ele... 33 1.4
AL592046-2|CAI39579.1| 1672|Homo sapiens upstream regulatory ele... 33 1.4
AL359392-1|CAI40208.2| 1055|Homo sapiens LIM domain 7 protein. 31 7.3
AL137782-2|CAI40006.2| 1055|Homo sapiens LIM domain 7 protein. 31 7.3
AL137121-1|CAI39479.2| 1055|Homo sapiens LIM domain 7 protein. 31 7.3
AK090647-1|BAC03496.1| 353|Homo sapiens protein. 31 7.3
AF174600-1|AAF04521.1| 255|Homo sapiens F-box protein Fbx20 pro... 31 7.3
>Z97054-10|CAI42654.1| 4374|Homo sapiens upstream regulatory element
binding protein 1 (UREB1) protein.
Length = 4374
Score = 33.1 bits (72), Expect = 1.4
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -3
Query: 756 EKGGQVSG-KRXGSEQESARGSFQGETPGIF--IVLSGFATSDLSVDFCDARQGGGAYGK 586
EK G G KR EQ+ A GS T G+ I L G + + D A G
Sbjct: 979 EKAGTTQGGKRSDGEQDGAAGSMDASTQGLLEGIGLDGDTLAPMETDEPTASDSKGKSKI 1038
Query: 585 TPANAAFLR 559
TPA AA ++
Sbjct: 1039 TPAMAARIK 1047
>Z94044-4|CAI42354.1| 4374|Homo sapiens upstream regulatory element
binding protein 1 (UREB1) protein.
Length = 4374
Score = 33.1 bits (72), Expect = 1.4
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -3
Query: 756 EKGGQVSG-KRXGSEQESARGSFQGETPGIF--IVLSGFATSDLSVDFCDARQGGGAYGK 586
EK G G KR EQ+ A GS T G+ I L G + + D A G
Sbjct: 979 EKAGTTQGGKRSDGEQDGAAGSMDASTQGLLEGIGLDGDTLAPMETDEPTASDSKGKSKI 1038
Query: 585 TPANAAFLR 559
TPA AA ++
Sbjct: 1039 TPAMAARIK 1047
>Z94044-3|CAI42353.1| 1672|Homo sapiens upstream regulatory element
binding protein 1 (UREB1) protein.
Length = 1672
Score = 33.1 bits (72), Expect = 1.4
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -3
Query: 756 EKGGQVSG-KRXGSEQESARGSFQGETPGIF--IVLSGFATSDLSVDFCDARQGGGAYGK 586
EK G G KR EQ+ A GS T G+ I L G + + D A G
Sbjct: 979 EKAGTTQGGKRSDGEQDGAAGSMDASTQGLLEGIGLDGDTLAPMETDEPTASDSKGKSKI 1038
Query: 585 TPANAAFLR 559
TPA AA ++
Sbjct: 1039 TPAMAARIK 1047
>DQ097177-1|AAY98258.1| 4374|Homo sapiens Mcl-1 ubiquitin ligase
protein.
Length = 4374
Score = 33.1 bits (72), Expect = 1.4
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -3
Query: 756 EKGGQVSG-KRXGSEQESARGSFQGETPGIF--IVLSGFATSDLSVDFCDARQGGGAYGK 586
EK G G KR EQ+ A GS T G+ I L G + + D A G
Sbjct: 979 EKAGTTQGGKRSDGEQDGAAGSMDASTQGLLEGIGLDGDTLAPMETDEPTASDSKGKSKI 1038
Query: 585 TPANAAFLR 559
TPA AA ++
Sbjct: 1039 TPAMAARIK 1047
>AY929612-1|AAX24125.1| 4374|Homo sapiens LASU1 protein.
Length = 4374
Score = 33.1 bits (72), Expect = 1.4
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -3
Query: 756 EKGGQVSG-KRXGSEQESARGSFQGETPGIF--IVLSGFATSDLSVDFCDARQGGGAYGK 586
EK G G KR EQ+ A GS T G+ I L G + + D A G
Sbjct: 979 EKAGTTQGGKRSDGEQDGAAGSMDASTQGLLEGIGLDGDTLAPMETDEPTASDSKGKSKI 1038
Query: 585 TPANAAFLR 559
TPA AA ++
Sbjct: 1039 TPAMAARIK 1047
>AY772009-1|AAV90838.1| 4374|Homo sapiens ARF-binding protein 1
protein.
Length = 4374
Score = 33.1 bits (72), Expect = 1.4
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -3
Query: 756 EKGGQVSG-KRXGSEQESARGSFQGETPGIF--IVLSGFATSDLSVDFCDARQGGGAYGK 586
EK G G KR EQ+ A GS T G+ I L G + + D A G
Sbjct: 979 EKAGTTQGGKRSDGEQDGAAGSMDASTQGLLEGIGLDGDTLAPMETDEPTASDSKGKSKI 1038
Query: 585 TPANAAFLR 559
TPA AA ++
Sbjct: 1039 TPAMAARIK 1047
>AL592046-3|CAI39580.1| 4374|Homo sapiens upstream regulatory element
binding protein 1 (UREB1) protein.
Length = 4374
Score = 33.1 bits (72), Expect = 1.4
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -3
Query: 756 EKGGQVSG-KRXGSEQESARGSFQGETPGIF--IVLSGFATSDLSVDFCDARQGGGAYGK 586
EK G G KR EQ+ A GS T G+ I L G + + D A G
Sbjct: 979 EKAGTTQGGKRSDGEQDGAAGSMDASTQGLLEGIGLDGDTLAPMETDEPTASDSKGKSKI 1038
Query: 585 TPANAAFLR 559
TPA AA ++
Sbjct: 1039 TPAMAARIK 1047
>AL592046-2|CAI39579.1| 1672|Homo sapiens upstream regulatory element
binding protein 1 (UREB1) protein.
Length = 1672
Score = 33.1 bits (72), Expect = 1.4
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -3
Query: 756 EKGGQVSG-KRXGSEQESARGSFQGETPGIF--IVLSGFATSDLSVDFCDARQGGGAYGK 586
EK G G KR EQ+ A GS T G+ I L G + + D A G
Sbjct: 979 EKAGTTQGGKRSDGEQDGAAGSMDASTQGLLEGIGLDGDTLAPMETDEPTASDSKGKSKI 1038
Query: 585 TPANAAFLR 559
TPA AA ++
Sbjct: 1039 TPAMAARIK 1047
>AL359392-1|CAI40208.2| 1055|Homo sapiens LIM domain 7 protein.
Length = 1055
Score = 30.7 bits (66), Expect = 7.3
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +2
Query: 653 PDRTIKIPGVSPWKLPRALSCSDPCRLPDTCP 748
PDR +P PW LP + C L TCP
Sbjct: 210 PDRYHPVPFPEPWTLPPEIQAKFLCVLERTCP 241
>AL137782-2|CAI40006.2| 1055|Homo sapiens LIM domain 7 protein.
Length = 1055
Score = 30.7 bits (66), Expect = 7.3
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +2
Query: 653 PDRTIKIPGVSPWKLPRALSCSDPCRLPDTCP 748
PDR +P PW LP + C L TCP
Sbjct: 210 PDRYHPVPFPEPWTLPPEIQAKFLCVLERTCP 241
>AL137121-1|CAI39479.2| 1055|Homo sapiens LIM domain 7 protein.
Length = 1055
Score = 30.7 bits (66), Expect = 7.3
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +2
Query: 653 PDRTIKIPGVSPWKLPRALSCSDPCRLPDTCP 748
PDR +P PW LP + C L TCP
Sbjct: 210 PDRYHPVPFPEPWTLPPEIQAKFLCVLERTCP 241
>AK090647-1|BAC03496.1| 353|Homo sapiens protein.
Length = 353
Score = 30.7 bits (66), Expect = 7.3
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +2
Query: 671 IPGVSPWKLPRALSCSDPCRLPDTCP---PFSLREAWLFLIAHA 793
IP P +P A+ C+ PC +P T P P ++ +L + HA
Sbjct: 162 IPCTVPCTVPHAVPCNAPCTVPRTAPCTIPHAVPCTFLCAVPHA 205
>AF174600-1|AAF04521.1| 255|Homo sapiens F-box protein Fbx20
protein.
Length = 255
Score = 30.7 bits (66), Expect = 7.3
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +2
Query: 653 PDRTIKIPGVSPWKLPRALSCSDPCRLPDTCP 748
PDR +P PW LP + C L TCP
Sbjct: 84 PDRYHPVPFPEPWTLPPEIQAKFLCVLERTCP 115
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,695,560
Number of Sequences: 237096
Number of extensions: 2347119
Number of successful extensions: 9055
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9053
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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