Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_G16
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 29 0.66
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 28 2.0
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 28 2.0
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 3.5
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 6.1
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.1
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 26 6.1
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 26 8.1
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 26 8.1
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 26 8.1
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 29.5 bits (63), Expect = 0.66
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = +3
Query: 531 LDIPKVKKQSLQHLK-SSVEEDF-QFLSELAA-LKAVTEKVE-SXAISADNIIDFYNLRI 698
L+I K KK K ++V D Q+ E + ++ EK++ + + +N +F+NL+
Sbjct: 546 LEIEKRKKYETNEAKITTVATDLSQYYRESKEYIASLYEKLDRTERNNKENENNFWNLKF 605
Query: 699 NSLHALRDFHG 731
N L LR FHG
Sbjct: 606 NLLTMLRSFHG 616
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 27.9 bits (59), Expect = 2.0
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 176 SFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDP 292
SF S +SLL E+FSA LG +++ WN LL P
Sbjct: 32 SFLWSESAKKSLLNEVFSALLGY---DHTLWNTLLPERP 67
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = -1
Query: 297 LNGSVINNPFHSEFSSTE-RPREAENISFKRLSKVLLEPEKLNDSGLW---RMLSSPEAL 130
L G ++NPF S+F + E R EAE I ++ + ++ ++ +W RM++S +
Sbjct: 298 LLGDEVHNPF-SDFETVEDRAHEAEFIEKQKKHLSIEASDRFKENSMWEKNRMITSGVSK 356
Query: 129 IPIIE 115
P +E
Sbjct: 357 APGLE 361
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -2
Query: 290 DQLSIIHSIRSSLQRKGQEKQKIFLLKDSRKFYWNQRNLTTQDYG 156
DQL++ + ++ E Q LK+SR Y+N+ +L T +G
Sbjct: 1126 DQLNLSVQRSALIKAAFPESQSNANLKNSRGIYYNEHDLVTDIFG 1170
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 167 ESLSFSGSSKTFESLLKEIFSASLGLSVEENSE 265
E L SGS K FE+ + F+ L + V +N E
Sbjct: 119 ELLKKSGSYKGFEAFVNRTFAVLLRIVVNDNEE 151
>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +3
Query: 579 SVEEDFQFLSELAALKAVTEKVESXAISADNIIDFYNLRINSLHALRDFHGPNS 740
SV++D FLSE+ ALK + E + S + + ++ L AL + +G +S
Sbjct: 166 SVKQDRVFLSEIYALKILVEFLSSKSQQERSDTSIVIGQLVGLEALYEKYGKDS 219
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 158 HSPESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGL 277
+ +S S +GS + E +F GL E EWNG+
Sbjct: 321 YQEDSASEAGSIED-EQATDNVFGFGKGLEQENEEEWNGI 359
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 8.1
Identities = 20/89 (22%), Positives = 40/89 (44%)
Frame = -1
Query: 279 NNPFHSEFSSTERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKT 100
+ P HSE + + +++ +S LS +L PE S + + S A+ I+E
Sbjct: 266 HKPNHSENAELKDIKQSSELSDLSLSSQILYPESTTLSEISPIYDSELAIENILESKCFE 325
Query: 99 HTDTIVAAIFLDK*MTDCQILRIPYSEIV 13
+ I+ + D + +I YS+++
Sbjct: 326 NEQAIIEGVKDFTEFPDLEETQIIYSDLI 354
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 140 GELSILHSPESLSFSGSSK-TFESLLKEIFSASLGLSVEENSE 265
G + + SP +++ SGS + E++ EIF + GLS + +E
Sbjct: 132 GMIVMGESPMNMAKSGSKNLSSENMATEIFEINSGLSAQSGTE 174
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 8.1
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +3
Query: 390 VDEY-EPDTFDVLKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVLGDLDIPKVKKQSLQ 566
V E+ + ++FD ++ F N +N S + LLSY+ VLG ++ L
Sbjct: 364 VSEFVDENSFDSSSSCSSKVFLTTRNNSINSEDSAHEVLLSYNRVLGS----DIQGTILD 419
Query: 567 HLKSSVEEDFQFLSELAA 620
+K + D Q SEL +
Sbjct: 420 RVKKGYQFDSQKNSELVS 437
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,252,249
Number of Sequences: 5004
Number of extensions: 64048
Number of successful extensions: 241
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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