Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_G16
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016441-1|AAB65911.3|  383|Caenorhabditis elegans Hypothetical ...    30   2.5  
Z69884-4|CAA93751.2|  913|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated p...    29   5.8  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    29   5.8  
AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein.     29   5.8  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    29   5.8  

>AF016441-1|AAB65911.3|  383|Caenorhabditis elegans Hypothetical
           protein M03F8.4 protein.
          Length = 383

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 507 SYSNVLGDLDIPKVKKQSLQHLKSSVEEDFQFLSELAALKAVTEKVESXAISADNII 677
           ++ N   +  +P +K ++L    S + ED    S+  ALK +  K++S   S  NI+
Sbjct: 243 TFFNDFDEFFVPVIKSRTLFETISGLFEDPTIGSQRTALKYINAKIKSAPYSLKNIV 299


>Z69884-4|CAA93751.2|  913|Caenorhabditis elegans Hypothetical
           protein F31F6.5 protein.
          Length = 913

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -1

Query: 558 TVF*LLEYLNHLTHLNMTKADQSHL 484
           TVF LLEYLN+L+ LN    D   L
Sbjct: 639 TVFFLLEYLNYLSELNAEVEDTERL 663


>U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated
           protein 83, isoform a protein.
          Length = 1041

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +3

Query: 576 SSVEEDFQFLSELAALKAVTEKVESXAISADNIIDFYNLRINSLHAL 716
           S VE      SE   LK +    E   I  +N    YNL ++SLH L
Sbjct: 8   SEVEMPNDISSEDHLLKVIESSAEEVDIFLENCSSLYNLILDSLHNL 54


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
           lineage protein 13 protein.
          Length = 2248

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 23/78 (29%), Positives = 41/78 (52%)
 Frame = -1

Query: 246 ERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKTHTDTIVAAIFL 67
           ERP E+E  + KR+ KV  +   L+     R+L  PE  + I+EE +  H ++I + +  
Sbjct: 685 ERP-ESEKEARKRIEKVYKKHVLLSRE---RLLD-PEEALRILEESRMVHLNSIQSTLAD 739

Query: 66  DK*MTDCQILRIPYSEIV 13
           D  M+  + + +P S  +
Sbjct: 740 DIAMSCIRTISLPASNCI 757


>AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein.
          Length = 1041

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +3

Query: 576 SSVEEDFQFLSELAALKAVTEKVESXAISADNIIDFYNLRINSLHAL 716
           S VE      SE   LK +    E   I  +N    YNL ++SLH L
Sbjct: 8   SEVEMPNDISSEDHLLKVIESSAEEVDIFLENCSSLYNLILDSLHNL 54


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
           protein LIN-13 protein.
          Length = 2248

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 23/78 (29%), Positives = 41/78 (52%)
 Frame = -1

Query: 246 ERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKTHTDTIVAAIFL 67
           ERP E+E  + KR+ KV  +   L+     R+L  PE  + I+EE +  H ++I + +  
Sbjct: 685 ERP-ESEKEARKRIEKVYKKHVLLSRE---RLLD-PEEALRILEESRMVHLNSIQSTLAD 739

Query: 66  DK*MTDCQILRIPYSEIV 13
           D  M+  + + +P S  +
Sbjct: 740 DIAMSCIRTISLPASNCI 757


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,502,133
Number of Sequences: 27780
Number of extensions: 337428
Number of successful extensions: 1030
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)