Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_G14
(888 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation... 50 3e-07
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 29 0.67
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 29 0.88
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 29 1.2
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 29 1.2
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 28 1.5
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 28 2.0
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 27 3.6
SPBC1709.20 |pop8||RNase P and RNase MRP subunit Pop8 |Schizosac... 27 3.6
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 27 4.7
SPAC1B3.01c |||uracil phosphoribosyltransferase |Schizosaccharom... 26 8.2
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos... 26 8.2
>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
specificity factor complex subunit
Pta1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 50.4 bits (115), Expect = 3e-07
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 14/174 (8%)
Frame = +1
Query: 337 MIPVYMENILSYISDKNTDVKKQVAYFVE-ELSKSHPELLPKIVAQLRLLLLDPVIA--- 504
+ P + NILS + + KK +A F+ S + + K+ L + LD +++
Sbjct: 26 LFPEIVRNILSVANYSDIRYKKWMANFLWFGFSSKNVKFEQKL--DLAVTCLDTIVSLYA 83
Query: 505 -----VQKRAIQAASILYRNTLMWICKGDAEVSEMKHVWEHLTELKLMVLNMIDSENEGI 669
V+K I + +Y + C + S W+ LT+LK ++N D N+ +
Sbjct: 84 VDNEEVKKDVISCSCTIYPLVFLHCCTSPNDSS----TWDTLTKLKNEIINDFDKGNKPL 139
Query: 670 RTHSIKFLEEVVLRQSPGD-----IVDAESSLDSLPSDVPFINRKALEEESDHI 816
IKF+ V+L Q PG + ++ SL +P+ PFIN L E++ +
Sbjct: 140 LISCIKFISCVILTQVPGIRDPRLVTKSDVSLSKVPTHHPFINSNILRIEANDL 193
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 29.5 bits (63), Expect = 0.67
Identities = 21/86 (24%), Positives = 39/86 (45%)
Frame = +1
Query: 229 QNQLIRWINDTGMAEGNKKAGLLRKVIEVLLHQGSQMIPVYMENILSYISDKNTDVKKQV 408
Q +L + +T +G ++A L K I ++ +LS+ISD + V
Sbjct: 355 QKELTKSNGETEKDDGRRRA--LTKAIHSCAINFPHTAATAIQYLLSHISDFQSKSASSV 412
Query: 409 AYFVEELSKSHPELLPKIVAQLRLLL 486
F++E+ + P+L + +L L L
Sbjct: 413 LSFIKEVMEKFPDLRSSNITKLLLSL 438
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 29.1 bits (62), Expect = 0.88
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 637 LNMIDSENEGIRTHSIKFLEEVVLRQSPGDI-VDAESSLDSLPSDVPF 777
+ ++ +N + THSI+FLE+ S G + V+ + ++ LPS + F
Sbjct: 486 VELLPYKNSRMVTHSIRFLEQSYTNVSNGLVFVNTTTDVNKLPSIIEF 533
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +1
Query: 343 PVYMENILSYISDKNTDVKKQVAYFVEELSKSHPELLPKIVAQLRLLLLDPVIAVQKRAI 522
P + I+S +D++ V+ V + ++ E +P+I + + DP V+KRAI
Sbjct: 813 PEVLAQIISKSNDQSAIVRDTVLDLLGTYIMAYRETIPQIYGCIISGISDPSTIVRKRAI 872
Query: 523 QAASILYRNT 552
+ +Y T
Sbjct: 873 KQLCEVYEAT 882
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 28.7 bits (61), Expect = 1.2
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Frame = +1
Query: 586 SEMKHVWEHLTELKLMVLNMIDSENEGIRTHSIKFLEEVVLRQSP----GDIVDA-ESSL 750
S ++ V E L+ L+ V + D + E + E++ +Q+ D+ E L
Sbjct: 895 SRVEVVHERLSSLENQV-TIADEKYEFLYAEKQSIEEDLANKQTEISYLSDLSSTLEKKL 953
Query: 751 DSLPSDVPFINRKALEEESDHIFXLLVKFHNSQHISSV 864
S+ D I+ K E E D++ + H+SQH+S++
Sbjct: 954 SSIKKDEQTISSKYKELEKDYLNIMADYQHSSQHLSNL 991
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 28.3 bits (60), Expect = 1.5
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 583 VSEMKHVWEHLTELKLMVLNMIDS-ENEGIRTHSIKFLEEVVLRQSPGDIVDAESSLDSL 759
V E KH+ E LTE+ +M +D+ +E + H + L++VV Q+ DI +
Sbjct: 259 VEETKHLLEKLTEVNVMCDRHMDAISSEELACHQLTQLKKVV--QTLEDIYSEHKKVSED 316
Query: 760 PSDVPFI 780
D F+
Sbjct: 317 VKDQRFL 323
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -1
Query: 525 LDSPLLYCNDWIEE*ETQLSDDLGKKFRVTFTQLFNKIRDL 403
LDS L N++IE+ L GKK + F++ + +RDL
Sbjct: 1342 LDSQLKSYNEYIEQAMETLQSKKGKKKLIPFSKQYFHMRDL 1382
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 794 SKRNLTISSNYWSNFIIHST 853
S RNLT+ SN +SNFI +T
Sbjct: 168 SLRNLTLDSNLFSNFISSNT 187
>SPBC1709.20 |pop8||RNase P and RNase MRP subunit Pop8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 108
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 299 LNKPAFLFPSAIPVSFIHRIS*F 231
LN+ +F SAIP+ F+HR S F
Sbjct: 41 LNQSFGIFGSAIPIDFLHRQSKF 63
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/67 (23%), Positives = 36/67 (53%)
Frame = +1
Query: 358 NILSYISDKNTDVKKQVAYFVEELSKSHPELLPKIVAQLRLLLLDPVIAVQKRAIQAASI 537
N++ ++DK + +++Q+ +EL S E IVA +L +++ +K+A++
Sbjct: 656 NLMEILNDKISVLQRQLTDVKDELDVSEEEREEAIVAGQKLSASFELMSNEKQALELKYS 715
Query: 538 LYRNTLM 558
+N L+
Sbjct: 716 SLKNELI 722
>SPAC1B3.01c |||uracil phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 219
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 451 LPKIVAQLRLLLLDPVIAVQKRAIQAASIL 540
LP+ +++ +LLLDP++A AI A IL
Sbjct: 125 LPEDISKRYVLLLDPMLATGGSAICAMEIL 154
>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
Ups1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 113 KGIKKYGD*QKFAPILKYTRLFFQNLKDSL 24
+ +KYG F P+L++ R+ + L+D L
Sbjct: 19 EAFEKYGRDTAFIPVLRHKRVHEEQLRDKL 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,552,135
Number of Sequences: 5004
Number of extensions: 75637
Number of successful extensions: 251
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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