Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_G14
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818... 54 2e-07
04_01_0308 + 4188726-4190351 33 0.23
02_02_0411 - 9928175-9928187,9928385-9928575,9929044-9929126,992... 33 0.30
11_03_0011 + 8934346-8934398,8936014-8936198,8936334-8936425,893... 32 0.70
06_01_0158 - 1186903-1187013,1187108-1187197,1187504-1187590,118... 31 1.6
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422... 29 3.7
04_04_1027 - 30216859-30217212,30218769-30219178,30219395-30219800 29 3.7
09_04_0658 + 19275129-19275363,19275453-19275544,19276440-192765... 29 4.9
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038... 29 4.9
03_02_0433 + 8398455-8399601,8399677-8399976,8400085-8401421 29 6.5
02_05_1315 + 35675285-35676688,35676816-35677255,35677341-35678784 29 6.5
05_03_0577 + 15671570-15672432,15672571-15672785,15672825-156729... 28 8.6
01_01_0116 - 861044-861405,861495-861633,862078-862501,862634-86... 28 8.6
>07_03_1783 +
29480987-29481165,29481526-29481685,29481767-29481862,
29481948-29482062,29482175-29482337,29482536-29482707,
29483924-29484013,29484137-29484598,29484675-29485268,
29485486-29485554,29485810-29485902,29486432-29486677,
29487277-29487417,29487748-29487828,29487911-29487973,
29488059-29488166,29488303-29488383,29488474-29488521,
29488979-29489053,29489973-29490068,29490156-29490236,
29490295-29490402,29490989-29491033,29491119-29491202,
29491379-29491482,29491581-29491728
Length = 1233
Score = 54.0 bits (124), Expect = 2e-07
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 8/132 (6%)
Frame = +1
Query: 349 YMENILSYISDKNTDVKKQVAYFVEELSKSHPELLPKIVAQLRLLLLDPVIAVQKRAIQA 528
++ I +D+ + V+K VA + E+ H LP ++ L LL D AV ++AI+
Sbjct: 39 FVARIADLHADQASPVRKLVAEMIGEVGSKHMAYLPNVMPCLLHLLNDDTPAVARQAIKT 98
Query: 529 ASILYRNTLMWIC------KGDAEVSEMKHVWEHLTELKLMVLNMI--DSENEGIRTHSI 684
+ L+ L + G + S +K WE L +LK V +M NEG R +I
Sbjct: 99 GTTLFAKVLRQLVIQGLFSSGGIDDS-LKLSWEALLKLKSAVSHMAFQPMSNEGARLLAI 157
Query: 685 KFLEEVVLRQSP 720
KF+E+ VL +P
Sbjct: 158 KFVEKTVLLYTP 169
>04_01_0308 + 4188726-4190351
Length = 541
Score = 33.5 bits (73), Expect = 0.23
Identities = 21/80 (26%), Positives = 40/80 (50%)
Frame = +1
Query: 574 DAEVSEMKHVWEHLTELKLMVLNMIDSENEGIRTHSIKFLEEVVLRQSPGDIVDAESSLD 753
+AE+ +K + E E+K D+E E I S ++ Q+ D+V++E+ D
Sbjct: 218 EAEIKCLKQILEVAMEVKEAAAESFDAEKEEIMKQSNNLKRKIEENQASKDLVESEN--D 275
Query: 754 SLPSDVPFINRKALEEESDH 813
L S + + +K + E+D+
Sbjct: 276 KLRSKMVTVKQKHNQFEADN 295
>02_02_0411 -
9928175-9928187,9928385-9928575,9929044-9929126,
9929444-9929516,9929588-9929681,9930100-9930160,
9930824-9930884,9930963-9931046,9931196-9931390,
9931526-9931605,9932595-9932691,9934198-9934313,
9934407-9934476,9935439-9935530,9935661-9935823
Length = 490
Score = 33.1 bits (72), Expect = 0.30
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 451 LPKIVAQLRLLLLDPVIAVQKRAIQAASILYR 546
LPK +A +LLLDP++ A+QA S+L +
Sbjct: 377 LPKDIANRHVLLLDPILGTGNSAVQAISLLLK 408
>11_03_0011 +
8934346-8934398,8936014-8936198,8936334-8936425,
8937699-8937768,8937856-8937971,8939050-8939146,
8939965-8940044,8940198-8940392,8940548-8940631,
8940709-8940769,8941530-8941590,8942023-8942116,
8942188-8942260,8942573-8942655,8943241-8943431,
8943563-8943572
Length = 514
Score = 31.9 bits (69), Expect = 0.70
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 451 LPKIVAQLRLLLLDPVIAVQKRAIQAASILYR 546
+PK +A +LLLDP++ A+QA S+L +
Sbjct: 402 VPKDIANRHVLLLDPILGTGNSAVQAISLLLK 433
>06_01_0158 -
1186903-1187013,1187108-1187197,1187504-1187590,
1187668-1187839,1187917-1188647,1188789-1188861,
1189295-1189380,1189455-1189529,1189610-1189643,
1190331-1190622,1191073-1191439
Length = 705
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/33 (57%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 435 KSP*TSSQDRRSVA--SPTPRSSHCSTEEGYPS 527
+SP SSQ RRS+A SP RS ST GYPS
Sbjct: 75 RSPGGSSQPRRSLADRSPGNRSELRSTPAGYPS 107
>11_01_0533 +
4214900-4215162,4215986-4219043,4219613-4221539,
4221561-4222094,4222388-4222842,4223073-4223189,
4223319-4223477
Length = 2170
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = +1
Query: 352 MENILSYISDKNTDVKKQVAYFVEELSKSHPELLPKIV------AQLRLLLLDPVIAVQK 513
+E I IS KNT + A + L + + +PKI+ A LRLL D I+V++
Sbjct: 283 VEIITGLISSKNTTSQSNAASLLARLVSAFGDSIPKIIDAGAVKALLRLLNRDNDISVRE 342
Query: 514 RAIQAASIL 540
A A L
Sbjct: 343 SAADALEAL 351
>04_04_1027 - 30216859-30217212,30218769-30219178,30219395-30219800
Length = 389
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 172 LYEQYRMSNKHGHTSNTTVQNQLIRWINDTGMAEGNK 282
L + M+ HGH S T V NQ+ R+ G + NK
Sbjct: 255 LLQVQSMAKLHGHKSPTKVTNQVFRYAKKVGASYINK 291
>09_04_0658 +
19275129-19275363,19275453-19275544,19276440-19276509,
19276617-19276735,19277026-19277122,19277229-19277308,
19277443-19277637,19277727-19277810,19277931-19277991,
19278682-19278742,19279162-19279255,19279357-19279429,
19279834-19279916,19280008-19280154
Length = 496
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 451 LPKIVAQLRLLLLDPVIAVQKRAIQAASILYR 546
LP +A+ +LLLDPV+ A QA +L R
Sbjct: 402 LPMDIAERHVLLLDPVLGTGNSANQAIELLIR 433
>07_03_0997 -
23203166-23203330,23203627-23203693,23203771-23203862,
23204820-23204956,23205050-23205116,23205212-23205278,
23205356-23205441,23206061-23206153,23206337-23206522,
23207316-23207372,23207455-23207582,23207662-23207731,
23207815-23207950,23208378-23208529,23208606-23208680,
23208765-23208929,23209063-23209128,23209229-23209333,
23209929-23210132,23210462-23211715
Length = 1123
Score = 29.1 bits (62), Expect = 4.9
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Frame = +1
Query: 343 PVYMENILSYI-SDKNTDVKKQVAYFVEELSKSHPELLPKIVAQLRLLLLDPVIAVQKRA 519
P + +LS + S N D A F L SHPE L +L L P RA
Sbjct: 18 PAAFDALLSTLMSSSNADRAAAEAAF-HRLRGSHPEPL---ALRLASSLSSPATPADLRA 73
Query: 520 IQAASILYRNTLMWICKGDAEVSEMKHVWEHLT 618
+ A++L R L DA + VW HL+
Sbjct: 74 M--AAVLLRKLLSPTPSSDASSAAAAPVWPHLS 104
>03_02_0433 + 8398455-8399601,8399677-8399976,8400085-8401421
Length = 927
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +1
Query: 469 QLRLLLLDPVIAVQKR--AIQAASILYRNTLMWICKGDAEVSEMKHVWEHLTELKLMVLN 642
Q RL +++ V V +R A++A R+ + + KGD + ++ + +HL EL+ + L+
Sbjct: 855 QERLAIIEEVDHVYERLQALEADKEFLRHCIKSLKKGDRGMDLLQEILQHLRELRSVELH 914
Query: 643 M 645
+
Sbjct: 915 V 915
>02_05_1315 + 35675285-35676688,35676816-35677255,35677341-35678784
Length = 1095
Score = 28.7 bits (61), Expect = 6.5
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 595 KHVWEHLTELKLMVLNMIDSENEG-IRTHSIKFLEEVVLRQSPGDIVDAESSLDSLPSDV 771
+H W HL L L + ++ + +R + FL++ +L SP + SSL S PSD
Sbjct: 28 RHRWLHLPLLDLALSSLPRRDLPSHLRPLLLSFLDDHLLPPSPTHLPLLLSSLLSFPSDH 87
Query: 772 P 774
P
Sbjct: 88 P 88
>05_03_0577 +
15671570-15672432,15672571-15672785,15672825-15672954,
15672990-15673794,15674505-15674715,15674829-15675436
Length = 943
Score = 28.3 bits (60), Expect = 8.6
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = -3
Query: 661 HSHCRSCLKPSTLIQLNVPIHVSFQRLQHHLYRSTLTYYGTVYWLLG*PSSVLQ*LDRGV 482
++H R P L ++ + +SF R H Y TLT+ G LLG S L +G+
Sbjct: 727 YAHTRE-YSPELLKKIEIEDGISF-RFFHKEY--TLTWKG-FSTLLGFHDSCKIDLQKGI 781
Query: 481 GDATERRSWEEVQG 440
+ R WE++ G
Sbjct: 782 SGFEKNRFWEDISG 795
>01_01_0116 -
861044-861405,861495-861633,862078-862501,862634-863131,
863217-863249,863490-863680,863828-864132,864196-864208
Length = 654
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -2
Query: 674 VLIPSFSLSIMFKTINFNSVKCSHTCFISETSASPLQIHINVLR 543
VL+P L + K +N NS C+ FISE + + H+NV+R
Sbjct: 250 VLLPG-DLHVAVKMLNGNS-NCNGEEFISEVATIGMIHHVNVVR 291
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,113,470
Number of Sequences: 37544
Number of extensions: 417740
Number of successful extensions: 1256
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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