Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_G14
(888 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022973-10|AAC25795.2| 1143|Caenorhabditis elegans Hypothetical... 42 6e-04
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 34 0.16
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 34 0.16
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 34 0.16
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 34 0.16
Z93379-4|CAB07588.1| 306|Caenorhabditis elegans Hypothetical pr... 29 3.4
U41014-3|AAK32948.1| 519|Caenorhabditis elegans Hypothetical pr... 29 4.4
AF068709-2|AAC19251.2| 429|Caenorhabditis elegans Hypothetical ... 29 4.4
AL034393-4|CAA22310.1| 158|Caenorhabditis elegans Hypothetical ... 28 7.8
AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ... 28 7.8
>AF022973-10|AAC25795.2| 1143|Caenorhabditis elegans Hypothetical
protein F25G6.2 protein.
Length = 1143
Score = 41.9 bits (94), Expect = 6e-04
Identities = 23/73 (31%), Positives = 41/73 (56%)
Frame = +1
Query: 502 AVQKRAIQAASILYRNTLMWICKGDAEVSEMKHVWEHLTELKLMVLNMIDSENEGIRTHS 681
+V KR + A++ LY L + + +E W+ LK + ++ ++EG+RT +
Sbjct: 114 SVIKRVVVASTNLYPIVLEFAIMDKNDNAES--CWDAFNLLKNRICMLVSDDHEGVRTVT 171
Query: 682 IKFLEEVVLRQSP 720
+KFLE ++L QSP
Sbjct: 172 VKFLEALILCQSP 184
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 33.9 bits (74), Expect = 0.16
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 2/137 (1%)
Frame = +1
Query: 457 KIVAQLRLLLLDPVI-AVQKRAIQAASILYRNTLMWICKGDA-EVSEMKHVWEHLTELKL 630
++ +RL LL P++ VQ+ + S+L + W + A E+ EM WE LK
Sbjct: 2082 RVYYHVRLELLTPLLNGVQRALVMPNSVLEK--FSWQTRRHAVEICEMVIKWELFRTLKT 2139
Query: 631 MVLNMIDSENEGIRTHSIKFLEEVVLRQSPGDIVDAESSLDSLPSDVPFINRKALEEESD 810
+ I S+ E + K L+++ S D D E + + D+P R ++E +D
Sbjct: 2140 ---DHIISDEEALEVD--KQLDKLRTASST-DRFDFEEAHNK--RDMPDAQRTIIKEHAD 2191
Query: 811 HIFXLLVKFHNSQHISS 861
I +LV+F + H +S
Sbjct: 2192 VIVNMLVRFCMTFHQNS 2208
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 33.9 bits (74), Expect = 0.16
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 2/137 (1%)
Frame = +1
Query: 457 KIVAQLRLLLLDPVI-AVQKRAIQAASILYRNTLMWICKGDA-EVSEMKHVWEHLTELKL 630
++ +RL LL P++ VQ+ + S+L + W + A E+ EM WE LK
Sbjct: 2088 RVYYHVRLELLTPLLNGVQRALVMPNSVLEK--FSWQTRRHAVEICEMVIKWELFRTLKT 2145
Query: 631 MVLNMIDSENEGIRTHSIKFLEEVVLRQSPGDIVDAESSLDSLPSDVPFINRKALEEESD 810
+ I S+ E + K L+++ S D D E + + D+P R ++E +D
Sbjct: 2146 ---DHIISDEEALEVD--KQLDKLRTASST-DRFDFEEAHNK--RDMPDAQRTIIKEHAD 2197
Query: 811 HIFXLLVKFHNSQHISS 861
I +LV+F + H +S
Sbjct: 2198 VIVNMLVRFCMTFHQNS 2214
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 33.9 bits (74), Expect = 0.16
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 2/137 (1%)
Frame = +1
Query: 457 KIVAQLRLLLLDPVI-AVQKRAIQAASILYRNTLMWICKGDA-EVSEMKHVWEHLTELKL 630
++ +RL LL P++ VQ+ + S+L + W + A E+ EM WE LK
Sbjct: 2088 RVYYHVRLELLTPLLNGVQRALVMPNSVLEK--FSWQTRRHAVEICEMVIKWELFRTLKT 2145
Query: 631 MVLNMIDSENEGIRTHSIKFLEEVVLRQSPGDIVDAESSLDSLPSDVPFINRKALEEESD 810
+ I S+ E + K L+++ S D D E + + D+P R ++E +D
Sbjct: 2146 ---DHIISDEEALEVD--KQLDKLRTASST-DRFDFEEAHNK--RDMPDAQRTIIKEHAD 2197
Query: 811 HIFXLLVKFHNSQHISS 861
I +LV+F + H +S
Sbjct: 2198 VIVNMLVRFCMTFHQNS 2214
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 33.9 bits (74), Expect = 0.16
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 2/137 (1%)
Frame = +1
Query: 457 KIVAQLRLLLLDPVI-AVQKRAIQAASILYRNTLMWICKGDA-EVSEMKHVWEHLTELKL 630
++ +RL LL P++ VQ+ + S+L + W + A E+ EM WE LK
Sbjct: 2088 RVYYHVRLELLTPLLNGVQRALVMPNSVLEK--FSWQTRRHAVEICEMVIKWELFRTLKT 2145
Query: 631 MVLNMIDSENEGIRTHSIKFLEEVVLRQSPGDIVDAESSLDSLPSDVPFINRKALEEESD 810
+ I S+ E + K L+++ S D D E + + D+P R ++E +D
Sbjct: 2146 ---DHIISDEEALEVD--KQLDKLRTASST-DRFDFEEAHNK--RDMPDAQRTIIKEHAD 2197
Query: 811 HIFXLLVKFHNSQHISS 861
I +LV+F + H +S
Sbjct: 2198 VIVNMLVRFCMTFHQNS 2214
>Z93379-4|CAB07588.1| 306|Caenorhabditis elegans Hypothetical
protein F21H7.5 protein.
Length = 306
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 225 STKSANTMDKRYWNGGRKQKSRLIEKSHRSSATSRLANDSSIHGEYTKLHQR*KYRRKEA 404
S+K K+ G + SR+ KSHRSS T++ + S G+ K + K R ++
Sbjct: 22 SSKDRQADRKKTKKGSGSKSSRVSSKSHRSSKTNKRSGKSGKSGKTGKSGKSGKSSRGKS 81
Query: 405 GR 410
+
Sbjct: 82 SK 83
>U41014-3|AAK32948.1| 519|Caenorhabditis elegans Hypothetical
protein C06G1.1 protein.
Length = 519
Score = 29.1 bits (62), Expect = 4.4
Identities = 23/65 (35%), Positives = 32/65 (49%)
Frame = +1
Query: 691 LEEVVLRQSPGDIVDAESSLDSLPSDVPFINRKALEEESDHIFXLLVKFHNSQHISSVNL 870
L V +QS + + AE P V IN+KAL SD + +VKF NS + N+
Sbjct: 11 LSNVTQQQSLANSLFAEEGTS--PGFVTRINKKALSIVSDQLKDRVVKFMNSDGL-EFNI 67
Query: 871 MACMT 885
A +T
Sbjct: 68 SAPLT 72
>AF068709-2|AAC19251.2| 429|Caenorhabditis elegans Hypothetical
protein C24B9.3a protein.
Length = 429
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/74 (22%), Positives = 31/74 (41%)
Frame = -2
Query: 737 ASTISPGLCRSTTSSKNLMECVLIPSFSLSIMFKTINFNSVKCSHTCFISETSASPLQIH 558
AST + +C T S +E ++ S + + F ++ F+S + SPL
Sbjct: 14 ASTSASHICLQTACSSFNVESDIVIVVDASNAYDQVTFEQIRTFLLNFVSSLTVSPLDSQ 73
Query: 557 INVLRYSILAAWIA 516
+ + Y A +A
Sbjct: 74 VALYAYGSSAQTVA 87
>AL034393-4|CAA22310.1| 158|Caenorhabditis elegans Hypothetical
protein Y18D10A.4 protein.
Length = 158
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = -2
Query: 659 FSLSIMFKTINFNSVKCSHTCFISETSASPLQIHINVLRYSILAAWIALFCTAMTGSRSR 480
FSL + ++ ++ T S +S + +++ +S+L AW + +TG R
Sbjct: 55 FSLDCLSLSLTLSTAAVVATATSSSSSPKAFGVSVSLFLWSLLVAWYVVGVLLVTGGMDR 114
Query: 479 RR 474
+
Sbjct: 115 EK 116
>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
protein F52G3.1 protein.
Length = 1172
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 288 RLIEKSHRSSATSRLANDSSIHGEYTKLHQR*KYRRKEAGRV 413
R E SHR S +N SS H + K H ++KE ++
Sbjct: 552 RFAENSHRERKDSHRSNVSSHHSDDAKKHMNGHSKKKETEKL 593
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,274,320
Number of Sequences: 27780
Number of extensions: 407364
Number of successful extensions: 1230
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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