Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_G14
         (888 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    25   0.92 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   4.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   8.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   8.6  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 626 FNSVKCSHTCFISETSASPLQIHINVLRY 540
           F   KCS++C       S L+ H NV +Y
Sbjct: 17  FKCEKCSYSCVNKSMLNSHLKSHSNVYQY 45


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 458 RSSLSCVSYSSIQSLQYRRG 517
           RSSL C  Y   +S+ Y RG
Sbjct: 381 RSSLICDVYGVNESVSYERG 400


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 766 DVPFINRKALEEESDHIFXLLVKFHNSQ 849
           ++P +  + LE E+D I   ++KF   Q
Sbjct: 388 ELPNVGDEILEVENDKILQEVIKFRQKQ 415



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 13/67 (19%), Positives = 36/67 (53%)
 Frame = +1

Query: 571 GDAEVSEMKHVWEHLTELKLMVLNMIDSENEGIRTHSIKFLEEVVLRQSPGDIVDAESSL 750
           G A    M+H   H+T++ ++V+    + ++G++  +++ +E  + + +   I+ A + +
Sbjct: 202 GHAAFISMRHRGAHITDIVVLVV----AADDGVKEQTLQSIE--MAKDAKVPIIVAINKI 255

Query: 751 DSLPSDV 771
           D    D+
Sbjct: 256 DKPNIDI 262


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 775 KEHPMVGYPNWIQHQQYHXDFVGA 704
           KE   V   +W+   QY  DFVG+
Sbjct: 252 KESVEVDQLSWLGSGQYISDFVGS 275


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 775 KEHPMVGYPNWIQHQQYHXDFVGA 704
           KE   V   +W+   QY  DFVG+
Sbjct: 290 KESVEVDQLSWLGSGQYISDFVGS 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,556
Number of Sequences: 438
Number of extensions: 5133
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)