Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_G13
(866 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 307 1e-84
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 306 3e-84
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 145 6e-36
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 115 8e-27
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.86
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 1.1
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 27 4.6
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 26 8.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 8.0
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 307 bits (754), Expect = 1e-84
Identities = 147/242 (60%), Positives = 178/242 (73%), Gaps = 6/242 (2%)
Frame = +3
Query: 159 ISVHVGQAGVQLGNACWXLYCLXHGIQPDGQXPTD-----KXIXXXXXSFNTFFSETGAG 323
ISVHVGQAGVQ+GNACW LYCL HGI PDG PT+ K F TFFSETG G
Sbjct: 5 ISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSETGQG 63
Query: 324 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVL 503
K VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++D VL
Sbjct: 64 KFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVL 123
Query: 504 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPGAS-GF 680
+RIR++AD C+GLQGFL+FH LL+ERL+++YGKKS L+F++YP
Sbjct: 124 ERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVST 183
Query: 681 HCRRRAXTTLSSPPTQPLKHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNXLIGXIVSS 860
+ L++ T L +SDC FMVDNEA YDICRRNLDIERPTY NLN LI +VSS
Sbjct: 184 SVVEPYNSVLTTHAT--LDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSS 241
Query: 861 IT 866
IT
Sbjct: 242 IT 243
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 306 bits (751), Expect = 3e-84
Identities = 142/237 (59%), Positives = 175/237 (73%), Gaps = 1/237 (0%)
Frame = +3
Query: 159 ISVHVGQAGVQLGNACWXLYCLXHGIQPDGQXPTDKXIXXXXXSFNTFFSETGAGKHVPR 338
IS+HVGQAG Q+GNACW LYCL HGIQP+G + F+TFFSETG GK+VPR
Sbjct: 5 ISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYVPR 64
Query: 339 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 518
+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D+IR+
Sbjct: 65 SIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRR 124
Query: 519 LADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPGAS-GFHCRRR 695
+AD C+GLQGFL+FH LL+ERL+++Y KKSKL+F++YP
Sbjct: 125 IADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEP 184
Query: 696 AXTTLSSPPTQPLKHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNXLIGXIVSSIT 866
+ L++ T L +DC FMVDNE+ YDICRRNLDIERP+Y NLN LI +VSSIT
Sbjct: 185 YNSVLTTHATLDL--ADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSIT 239
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 145 bits (352), Expect = 6e-36
Identities = 80/237 (33%), Positives = 121/237 (51%), Gaps = 1/237 (0%)
Frame = +3
Query: 159 ISVHVGQAGVQLGNACWXLYCLXHGIQPDGQXPTDKXIXXXXXSFNTFFSETGAGKHVPR 338
+ + GQ G Q+G A W HG+ G N +F+E GK+VPR
Sbjct: 5 VHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHER--LNVYFNEAAGGKYVPR 62
Query: 339 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 518
AV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D VLD +R+
Sbjct: 63 AVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRR 122
Query: 519 LADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPG-ASGFHCRRR 695
A+ C LQGF + H LL+ ++ +Y + F++ P S
Sbjct: 123 EAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEP 182
Query: 696 AXTTLSSPPTQPLKHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNXLIGXIVSSIT 866
TLS Q +++SD F +DNEA+ I L I+ P+Y +LN L+ +++ +T
Sbjct: 183 YNATLSM--HQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVT 237
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 115 bits (277), Expect = 8e-27
Identities = 70/239 (29%), Positives = 120/239 (50%), Gaps = 3/239 (1%)
Frame = +3
Query: 159 ISVHVGQAGVQLGNACWXLYCLXHGIQPDGQXPTDKXIXXXXXSFNTFFSETGAGKHVPR 338
I++ GQ G Q+G+ W CL HGI PDG + + FF ++ +++PR
Sbjct: 6 ITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTL--ESFATEGVDRKDVFFYQSDDTRYIPR 63
Query: 339 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLVLDRI 512
A+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+ + I + ++D I
Sbjct: 64 AILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMI 122
Query: 513 RKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPGA-SGFHCR 689
+ AD L+GF + H L+ERL+ Y KK ++++P + S
Sbjct: 123 DREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVV 182
Query: 690 RRAXTTLSSPPTQPLKHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNXLIGXIVSSIT 866
+ +L + L ++D ++DN A+ I L + PT+ N L+ ++S+ T
Sbjct: 183 VQPYNSLLALKRLTL-NADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSAST 240
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 0.86
Identities = 24/79 (30%), Positives = 36/79 (45%)
Frame = +1
Query: 556 SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTPAPQVSTAVVEPXQLYPHHXHNP* 735
S+ P V P+ G P P+ TA++ +PS+ AP VST P P N
Sbjct: 1214 STAPPVPTPSAGLPPV-----PVPTAKAPPVPAPSSEAPSVST----PRSSVPSPHSNAS 1264
Query: 736 STLTVLSWSTMKPSMTSAA 792
+ T S ++ P+ TS +
Sbjct: 1265 PSPTSSSMASAAPARTSVS 1283
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.7 bits (61), Expect = 1.1
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Frame = +1
Query: 505 TESASSLTSVPVCKDS*--SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTPAPQV 678
T S + TS P+ S SSTP AL + +P+T++ LN S+P T + V
Sbjct: 1777 TSSTALNTSTPITSSSVLNSSTPITSSTALNTS------TPITSSSVLNSSTPITSSTVV 1830
Query: 679 STAVVEPXQLYPHHXHNP*STLTVLSWSTMKPS---MTSAAVISTLSAQPTPT*XVSSDX 849
+T+ + P ++ T L+ ST S + S+ I++ +A T T SS
Sbjct: 1831 NTSTPITSSTVV-NSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSV 1889
Query: 850 LS 855
L+
Sbjct: 1890 LN 1891
Score = 28.7 bits (61), Expect = 1.1
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Frame = +1
Query: 505 TESASSLTSVPVCKDS*--SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTPAPQV 678
T S TS P+ + SSTP + AL S +P+T++ LN S+P T + V
Sbjct: 2545 TSSTVVNTSTPITSSTVVNSSTPITSLTALNSS------TPITSSSVLNSSTPITSSTVV 2598
Query: 679 STAVVEPXQLYPHHXHNP*STLTVLSWSTMKPS---MTSAAVISTLSAQPTPT*XVSSDX 849
+T+ + P ++ T L+ ST S + S+ I++ +A T T SS
Sbjct: 2599 NTSTPITSSTVV-NSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSV 2657
Query: 850 LS 855
L+
Sbjct: 2658 LN 2659
Score = 27.1 bits (57), Expect = 3.5
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Frame = +1
Query: 616 SPLTTARSLNWSSPSTPAPQVSTAVVEPXQLYP-HHXHNP*STLTVLSWSTMKPS---MT 783
+P+T++ LN S+P T + V+T+ P Y + P ++ TVL+ ST S +
Sbjct: 562 TPITSSSVLNSSTPITSSTVVNTST--PITRYSVLNSSTPITSSTVLNSSTPITSSSVLN 619
Query: 784 SAAVISTLSAQPTPT*XVSSDXLS 855
S+ I++ +A T T SS L+
Sbjct: 620 SSTPITSSTALNTSTPITSSSVLN 643
Score = 27.1 bits (57), Expect = 3.5
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Frame = +1
Query: 505 TESASSLTSVPVCKDS*--SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTPAPQV 678
T S + TS P+ S SSTP L S +P+T++ LN S+P T + V
Sbjct: 1069 TSSTALNTSTPITSSSVLNSSTPITSSTVLNSS------TPITSSSVLNSSTPITSSTVV 1122
Query: 679 STAVVEPXQLYPHHXHNP*STLTVLSWSTMKPSMTSAAVIST 804
+T+ + P ++ +VL+ ST +TS+ V++T
Sbjct: 1123 NTSTPITSST-ALNTSTPITSSSVLNSST---PITSSTVVNT 1160
Score = 27.1 bits (57), Expect = 3.5
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
Frame = +1
Query: 505 TESASSLTSVPVCKDS*--SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTPAPQV 678
T S + TS P+ S SSTP L + +P+T++ LN S+P T + V
Sbjct: 1969 TSSTALNTSTPITSSSVLNSSTPITSSSVLNTS------TPITSSSVLNSSTPITSSTVV 2022
Query: 679 STAVVEPXQLYPHHXHNP*STLTVLSWSTMKPS---MTSAAVISTLSAQPTPT*XVSSDX 849
+T+ + P ++ T L+ ST S + S+ I++ +A T T SS
Sbjct: 2023 NTSTPITSSTVV-NSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSV 2081
Query: 850 LS 855
L+
Sbjct: 2082 LN 2083
Score = 27.1 bits (57), Expect = 3.5
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
Frame = +1
Query: 505 TESASSLTSVPVCKDS*--SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTPAPQV 678
T S TS P+ + SSTP L S +P+T++ LN S+P T + V
Sbjct: 2209 TSSTVVNTSTPITSSTVVNSSTPITSSTVLNSS------TPITSSSVLNSSTPITSSTVV 2262
Query: 679 STAVVEPXQLYPHHXHNP*STLTVLSWSTMKPSMT---SAAVISTLSAQPTPT*XVSSDX 849
+T+ + P ++ TV++ ST S T S+ I++ +A T T SS
Sbjct: 2263 NTSTPITSSTVV-NSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSV 2321
Query: 850 LS 855
L+
Sbjct: 2322 LN 2323
Score = 26.6 bits (56), Expect = 4.6
Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 11/128 (8%)
Frame = +1
Query: 505 TESASSLTSVPVCKDS*--SSTPSVEVPALG-SLPY*WSV-----SPLTTARSLNWSSPS 660
T S + TS P+ S SSTP AL S P S +P+T++ LN S+P
Sbjct: 1585 TSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPI 1644
Query: 661 TPAPQVSTAVVEPXQLYPHHXHNP*STLTVLSWSTMKPSMT---SAAVISTLSAQPTPT* 831
T + ++T+ + P ++ TV++ ST S T S+ I++ +A T T
Sbjct: 1645 TSSTALNTSPPITSSTVV-NSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTP 1703
Query: 832 XVSSDXLS 855
SS L+
Sbjct: 1704 ITSSSVLN 1711
Score = 26.2 bits (55), Expect = 6.0
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Frame = +1
Query: 505 TESASSLTSVPVCKDS*--SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTPAPQV 678
T S + TS P+ S SSTP L S +P+T++ LN S+P T + V
Sbjct: 733 TSSTALNTSTPITSSSVLNSSTPITSSSILNSS------TPITSSSVLNSSTPITSSTVV 786
Query: 679 STAVVEPXQLYPHHXHNP*STLTVLSWSTMKPSMTSAAVIST 804
+T+ + P ++ TVL+ ST +TS++V+++
Sbjct: 787 NTSTPITSSSV-LNSSTPITSSTVLNSST---PITSSSVLNS 824
Score = 25.8 bits (54), Expect = 8.0
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Frame = +1
Query: 505 TESASSLTSVPVCKDS*--SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSP--STPAP 672
T S+ TS P+ S SSTP L S +P+T++ LN S+P S+ A
Sbjct: 397 TSSSILNTSTPITSSSVLNSSTPITSSSILNSS------TPITSSTVLNSSTPITSSTAL 450
Query: 673 QVSTAVVEPXQLYPHHXHNP*STLTVLSWSTMKPSMTSAAVIST 804
ST + L + P ++ +VL+ ST +TS+ V++T
Sbjct: 451 NTSTPITSSSVL---NSSTPITSSSVLNSST---PITSSTVVNT 488
Score = 25.8 bits (54), Expect = 8.0
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Frame = +1
Query: 610 SVSPLTTARSLNWSSP--STPAPQVSTAVVEPXQLYPHHXHNP*STLTVLSWSTMKPSMT 783
S +P+T++ LN S+P S+ A ST + L + P ++ TV++ ST S T
Sbjct: 848 SSTPITSSSVLNSSTPITSSTALNTSTPITSSSVL---NSSTPITSSTVVNTSTPITSST 904
Query: 784 ---SAAVISTLSAQPTPT*XVSSDXLS 855
S+ I++ +A T T SS L+
Sbjct: 905 VVNSSTPITSSTALNTSTPITSSSVLN 931
Score = 25.8 bits (54), Expect = 8.0
Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 10/127 (7%)
Frame = +1
Query: 505 TESASSLTSVPVCKDS*--SSTPSVEVPALG-SLPY*WSV-----SPLTTARSLNWSSP- 657
T S + TS P+ S SSTP L S P S +P+T++ LN S+P
Sbjct: 913 TSSTALNTSTPITSSSVLNSSTPITSSTGLNTSTPITSSSVLNSSTPITSSTVLNSSTPI 972
Query: 658 -STPAPQVSTAVVEPXQLYPHHXHNP*STLTVLSWSTMKPSMTSAAVISTLSAQPTPT*X 834
S+ A ST + L S L + T + S+ I++ +A T T
Sbjct: 973 TSSTALNTSTPITSSSVLNSSTPITSSSVLNTSTPITSSSVLNSSTAITSSTALNTSTPI 1032
Query: 835 VSSDXLS 855
SS L+
Sbjct: 1033 TSSSVLN 1039
Score = 25.8 bits (54), Expect = 8.0
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Frame = +1
Query: 505 TESASSLTSVPVCKDS*--SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTPAPQV 678
T S TS P+ + SSTP L S +P+T++ LN S+P T + V
Sbjct: 2497 TSSTVVNTSTPITSSTVVNSSTPITSSTVLNSS------TPITSSSVLNSSTPITSSTVV 2550
Query: 679 STAVVEPXQLYPHHXHNP*STLTVLSWSTMKPSMTSAAVIST 804
+T+ + P ++LT L+ ST +TS++V+++
Sbjct: 2551 NTSTPITSSTVV-NSSTPITSLTALNSST---PITSSSVLNS 2588
Score = 25.8 bits (54), Expect = 8.0
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Frame = +1
Query: 610 SVSPLTTARSLNWSSPSTPAPQV--STAVVEPXQLYPHHXHNP*STLTVLSWSTMKPSMT 783
S +P+T++ +LN S+P T + + STA+ L + P ++ +VL+ ST +T
Sbjct: 3200 SSTPITSSTTLNTSTPITSSSVLNSSTAITSSSVL---NSSTPITSSSVLNSST---PIT 3253
Query: 784 SAAVIST 804
S+ V++T
Sbjct: 3254 SSTVVNT 3260
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 26.6 bits (56), Expect = 4.6
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Frame = +1
Query: 556 SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTPAPQVSTAVVE--PXQLYPHHXHN 729
+S+P+ + + ++ + +T + S N ++ S PAP S A V P H
Sbjct: 282 NSSPAAQNQHITTVDHVHPQVSMTPSLSTNNTATSVPAPYSSAASVNVVPGHATTILHHE 341
Query: 730 P*STL-TVLSWSTMKPSMTSAAVISTLSAQP 819
S L +W+ + PS+ + + ++ QP
Sbjct: 342 ESSALPPTAAWAKLSPSVLQERLRAAVNQQP 372
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 25.8 bits (54), Expect = 8.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 866 SDRGDNXSDETIQVGVGWALNVEITAADVIDG 771
SD ++ +D T VG+G AL I + D +DG
Sbjct: 187 SDNDEDPNDTT--VGIGAALAASILSVDSVDG 216
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 8.0
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 505 TESASSLTSVPVCKDS*SSTPSVEVPALGSLPY*WSVSPLTTAR-SLNWSSPSTPAPQVS 681
T + ++ TS+P +STP S ++ +P+T++ +++ S+P T P +
Sbjct: 470 TTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTT 529
Query: 682 T 684
T
Sbjct: 530 T 530
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,184,294
Number of Sequences: 5004
Number of extensions: 60741
Number of successful extensions: 303
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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