Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_G11
(890 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1008 - 7987936-7988628,7988923-7989102 32 0.53
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165 30 2.8
07_03_1769 + 29377784-29377878,29377993-29378180,29378340-293784... 30 2.8
03_01_0096 + 763850-764027,764873-765189,765262-765433,765513-76... 29 3.8
12_01_0816 + 7502669-7503145 29 5.0
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.7
09_06_0323 - 22337217-22337450,22338263-22339204 28 8.7
06_03_1378 + 29705711-29706725,29707139-29707363,29707445-29707554 28 8.7
01_01_1201 + 9678893-9679311,9679415-9679721 28 8.7
>01_01_1008 - 7987936-7988628,7988923-7989102
Length = 290
Score = 32.3 bits (70), Expect = 0.53
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 725 RKRHASRREKGGQVSGKPAGSEQESARGSFQGETPG 618
R R RR GG+V+G+ A + RG+++GE G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274
>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
Length = 430
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 637 SRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 518
SRGK L+S + R PP + + V+ + GGG G P T
Sbjct: 25 SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64
>07_03_1769 +
29377784-29377878,29377993-29378180,29378340-29378472,
29378580-29378715,29378996-29379072,29379162-29380830,
29380935-29381018,29381120-29381224,29381302-29381358
Length = 847
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -3
Query: 186 ITNFTNKAFFSLHSSCGLSKLINVSYHVWIQINPXLKGDPRPRYQ 52
+ +TN +FF+ HS+C +KLI+ H+ Q P L + +P +Q
Sbjct: 149 LKRYTNPSFFTSHSACS-TKLIHQRIHMAKQ-PPKLLLETKPTFQ 191
>03_01_0096 + 763850-764027,764873-765189,765262-765433,765513-765586,
765658-765835,765917-766026,766122-766221,766305-766391,
766505-766681,766847-767120,767201-767362,767450-767665,
767744-767781,768044-768102,768214-768339,768415-768540,
768642-768695,768789-768851,768924-768986,769079-769141,
769232-769732
Length = 1045
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 725 RKRHASRREKGGQVSGKPAGSEQESARGSFQGE 627
RK A GG++ +P GS+ S + S QGE
Sbjct: 962 RKGDARNSSIGGELENQPVGSQNASRKRSLQGE 994
>12_01_0816 + 7502669-7503145
Length = 158
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 822 RRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERR 691
R SG +R V PAW ER + ++ +V E+A ERR
Sbjct: 8 RSSGEGDRPVARWWPAWQEREKESLESSAVEGERATAEVGSERR 51
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 301 NESAN---ARGEAVCVLGALPLPRSLTRCAR 384
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>09_06_0323 - 22337217-22337450,22338263-22339204
Length = 391
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +3
Query: 588 GGETRQDYKDTRRFPLEAPSCALLFRPCRLTGYLSAFLPSGSVALSHSSRCRY 746
GGE ++ RRF AP ALL R +L ++ + A++HS+RCR+
Sbjct: 166 GGEAAREL--ARRFAA-APRRALLSRREQLRAAPASPAAMAAAAVAHSTRCRF 215
>06_03_1378 + 29705711-29706725,29707139-29707363,29707445-29707554
Length = 449
Score = 28.3 bits (60), Expect = 8.7
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +1
Query: 628 SPWKLPRALSCSDPAGLPDTCPPFSLREAWRFLIAHA-VGISVRCRSFAPSWAVCTNPPF 804
S +K+P A S PA +P T PP + A A A + AP+ A P
Sbjct: 333 SYFKIPAAAPSSAPAAVPCTAPPAAPAAASTAAPAAASTAAPAAASTAAPAAASTAAPAA 392
Query: 805 SPTAAPYPVT 834
+ TA P T
Sbjct: 393 ASTAVPDDAT 402
>01_01_1201 + 9678893-9679311,9679415-9679721
Length = 241
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -1
Query: 755 RTEIPTA*AMRKRHASRREKGGQVSGKPAGSEQESAR---GSFQGETPG 618
R E A + HA+RR++ G G G+ QESAR G+ + + PG
Sbjct: 11 RAEAAAHRAADELHAARRDEPGGGGGGMLGTVQESARSLLGAVRDKIPG 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,816,443
Number of Sequences: 37544
Number of extensions: 566767
Number of successful extensions: 1748
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1746
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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