Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_G11
         (890 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53336-10|AAA96182.2|  125|Caenorhabditis elegans Hypothetical p...    32   0.63 
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    32   0.63 
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr...    32   0.63 
Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical...    29   4.5  
U41993-7|AAA83450.2|  733|Caenorhabditis elegans Temporarily ass...    28   7.8  

>U53336-10|AAA96182.2|  125|Caenorhabditis elegans Hypothetical
           protein K07C11.10 protein.
          Length = 125

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 18/47 (38%), Positives = 28/47 (59%)
 Frame = -2

Query: 775 LERTTYTELRYLQREL*ESATLPEGRKADRYPVSRQGRNRRAHEGAS 635
           L+  T  +L  +QRE  E   +PEG+KA R P S +  + +++EG S
Sbjct: 66  LKTITTQKLEKMQREQMERLQVPEGQKA-RTPESAEAESPKSNEGPS 111


>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
           protein protein.
          Length = 1439

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
 Frame = -1

Query: 788 HTAQLG-ANDLHRTEIPTA*AM--------RKRHASRREKGGQVSGKPAGSEQESARGSF 636
           H++Q G + D+   E PTA A         +K  A+++  GG  SG  +GS+Q+ A G+ 
Sbjct: 717 HSSQAGPSRDIENGEAPTATATTPKSGRKWKKSKAAKQGSGGGSSGSSSGSQQQGAAGAP 776

Query: 635 Q 633
           Q
Sbjct: 777 Q 777


>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
           protein C04D8.1 protein.
          Length = 1317

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
 Frame = -1

Query: 788 HTAQLG-ANDLHRTEIPTA*AM--------RKRHASRREKGGQVSGKPAGSEQESARGSF 636
           H++Q G + D+   E PTA A         +K  A+++  GG  SG  +GS+Q+ A G+ 
Sbjct: 595 HSSQAGPSRDIENGEAPTATATTPKSGRKWKKSKAAKQGSGGGSSGSSSGSQQQGAAGAP 654

Query: 635 Q 633
           Q
Sbjct: 655 Q 655


>Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical
           protein F59F3.1 protein.
          Length = 1227

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 126 LINVSYHVWIQINPXLKGDPRPRYQQFKS*GIPYS 22
           ++ V Y  + +IN  + G P P YQ FK  G PY+
Sbjct: 683 VVIVDYDQYFEINCNMTGTPPPVYQWFKD-GNPYT 716


>AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.10 protein.
          Length = 986

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 595 KPDRTIKIPGVSPWKLPRALSCSDPAGLPDTCPPFSLREAWRFLIAHAVGI 747
           K   +I +PGV   ++    S  DP  LPD     +L E  R + A   G+
Sbjct: 220 KNHSSIHVPGVGDMRISNVTSLPDPCPLPDEIKKRALNEKERKVYAPFSGL 270


>U41993-7|AAA83450.2|  733|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 153, isoform b protein.
          Length = 733

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 566 KNRRSSQRWRNPTGL*RYQAFPPGSSLVRSPVPTLPAYR 682
           K  RSS  WR   G  R+ A  P  ++     P LP  R
Sbjct: 82  KGGRSSSNWRTTRGNGRHVAADPKFTITSEDFPALPGVR 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,593,378
Number of Sequences: 27780
Number of extensions: 419432
Number of successful extensions: 1138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)