Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_G09
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006761-8|AAF60552.2|  524|Caenorhabditis elegans Hypothetical ...    30   2.4  
AC006729-6|AAF60464.1|  282|Caenorhabditis elegans Hypothetical ...    28   7.4  

>AC006761-8|AAF60552.2|  524|Caenorhabditis elegans Hypothetical
           protein Y41G9A.6 protein.
          Length = 524

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
 Frame = +3

Query: 618 SQKSTLKSEVAKP---DRTIKIPGVPPGSSLVRSPVPT--LPLTGYLSAFLPSGSVALSH 782
           S +ST   +  KP   ++  ++PG   GSS + SPV T  L    Y   FL   +V  S 
Sbjct: 349 SHQSTSLEQTEKPSFLNQNAQVPGSAVGSSFLNSPVQTQNLSQNSYGKGFLAGITVVNSL 408

Query: 783 SSRCRYLSS 809
           +   R+ S+
Sbjct: 409 TQHQRFAST 417


>AC006729-6|AAF60464.1|  282|Caenorhabditis elegans Hypothetical
           protein Y24D9A.5 protein.
          Length = 282

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 478 GGNTVIHRIRGITQERTCEQKASKRPGTVK 567
           GG +V +R   + Q+++   ++SKRPG ++
Sbjct: 167 GGKSVFYRFTNLIQKKSFSVRSSKRPGILQ 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,858,913
Number of Sequences: 27780
Number of extensions: 337351
Number of successful extensions: 871
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)