Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_G08
(884 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 31 0.29
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 29 0.67
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 29 0.67
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 28 1.5
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 28 1.5
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi... 28 1.5
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 27 3.6
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 26 6.2
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 26 6.2
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 26 8.2
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 26 8.2
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra... 26 8.2
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 26 8.2
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 26 8.2
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 26 8.2
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 30.7 bits (66), Expect = 0.29
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Frame = +3
Query: 525 DTSIVEKMNDKHSVLERLSRRDAQRLEKLQKAHKAREEVDACDENEDYFSGSFKIKSEYV 704
+T+++E +NDK SVL+R D + ++L + + REE + S SF++ S
Sbjct: 654 NTNLMEILNDKISVLQR-QLTDVK--DELDVSEEEREEAIVAGQK---LSASFELMSNEK 707
Query: 705 EDLLAQVPTIDNSMLPSH--FDIIKKEIXELQK 797
+ L + ++ N ++ + D ++E+ EL K
Sbjct: 708 QALELKYSSLKNELINAQNLLDRREEELSELSK 740
Score = 25.8 bits (54), Expect = 8.2
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +3
Query: 513 IEPKDTSIVEKMNDKHSVLERLSRRDAQRLEKLQKAHK--AREEVDACDENEDYFSGSFK 686
IE ++ +++ +++ +++ +S + Q KLQ+ K RE DE E Y S F
Sbjct: 930 IEDLKLALQDELKNRNLLMDDISSYNKQTT-KLQEKIKWLERERSILIDELESYRSNQFN 988
Query: 687 IKSEYVED 710
++ V+D
Sbjct: 989 YQNNLVQD 996
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 29.5 bits (63), Expect = 0.67
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Frame = +3
Query: 507 FRIEPKDTSIVEKMNDKHSVLERLSRRDAQRLEKLQKAH-KAREE---VDACDENEDYFS 674
F P+ +++V+ ++ + + R + + +R ++ +KA KA +E V+ + + S
Sbjct: 633 FNDRPQGSALVKLVDAEELIAAREQKLEEERAKQAKKAQAKAEQEKKQVERVMKGKTSPS 692
Query: 675 GSFKIKSEYVEDLLAQVPTIDNSMLPSHFDIIKKEIXELQK 797
FK+ EY+ A +PT S D+ K +LQK
Sbjct: 693 EMFKMFKEYLSFDEAGLPTKMRGEDGSEIDVPKSRKKKLQK 733
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 29.5 bits (63), Expect = 0.67
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = +1
Query: 421 LFDEHSKNTDARKLSKQTIEQLKEA----ANQNSELNQKIQALLKK 546
L +HSK + ++S + ++ L++ A QN+ELN+KIQ +K
Sbjct: 208 LQSDHSKVCEKLEVSSRQVQDLEKKLAGLAQQNTELNEKIQLFEQK 253
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 436 SKNTDARKLSKQTIEQLKEAANQNSELNQKIQALLKK 546
S+N D R + EQL+ N+N E K+ ALL +
Sbjct: 47 SENIDLRTTAINLEEQLETVQNENEENKTKLAALLNR 83
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 238 YGVWYRLNTDRNFRLYMFKNHNWVLEAYYGL-GEKI 342
YG W + T +F +Y W++E YG+ GE++
Sbjct: 280 YGGWDGVKTFSDFWIYNVDKDLWIMENEYGIPGERV 315
>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
Hat1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/74 (22%), Positives = 36/74 (48%)
Frame = +3
Query: 489 RSCQPKFRIEPKDTSIVEKMNDKHSVLERLSRRDAQRLEKLQKAHKAREEVDACDENEDY 668
R C+ F + K S++E+ + + + ER+ R++ L +L K+ + + +A + D
Sbjct: 292 RCCELAFTTKLKKLSLLERKSVRLGIKERIFRQNLDVLLQLDKSERIEKIHNAYENQFDE 351
Query: 669 FSGSFKIKSEYVED 710
+ K + ED
Sbjct: 352 YKQIVKKLPKLKED 365
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 27.1 bits (57), Expect = 3.6
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +1
Query: 418 GLFDEHSKN-TDARKLSKQTIEQLKEAANQNSEL---NQKIQALLKK 546
GL D+ N TD + SKQTIE L N L N+K Q ++ K
Sbjct: 1310 GLCDDSLSNKTDCTESSKQTIETLMNYENDKQTLEGSNKKRQTVVLK 1356
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 442 NTDARKLSKQTIEQLKEAANQNSELNQKIQALLK 543
NTD R S EQL + + N+ ++ ++ L+K
Sbjct: 720 NTDCRSPSCSDFEQLGQESENNTSISGRVSKLVK 753
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/43 (23%), Positives = 26/43 (60%)
Frame = +3
Query: 504 KFRIEPKDTSIVEKMNDKHSVLERLSRRDAQRLEKLQKAHKAR 632
+FR ++ +E+ + + +E ++++ + +EKL++ KAR
Sbjct: 182 EFRASKREMERLERDQELRNKIEERNKKELETIEKLRELAKAR 224
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 409 GFIGLFDEHSKNTDARKLSKQTIEQLKEAANQNSELNQK 525
G+ EH + A L +T++ ++E A + ELNQK
Sbjct: 408 GYAEFLMEHEEYERAATLYAETLKSVEEVALKFIELNQK 446
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 516 EPKDTSIVEKMNDKHSVLERLSRRDAQRLEKLQKAHKAREEVDACDEN 659
+ +DT+ + M+D L RL + L+ L+ A K + ++A +N
Sbjct: 120 DAEDTTEEKSMDDSDKCLRRLKSHKERLLKLLEDAQKEYDTLEAESKN 167
>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
3-phosphatidyltransferase Pis1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 25.8 bits (54), Expect = 8.2
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +1
Query: 292 KNHNWVLEAYYG 327
K HNW+L YYG
Sbjct: 144 KKHNWMLRLYYG 155
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 525 DTSIVEKMNDKHSVLERLSRRDAQRLEKLQKAHKAREEVDACDENED 665
D + E + D++ + E R RLE++Q+ +EE+D +E +D
Sbjct: 3 DWRLTENVLDQN-IPETKPRESKTRLEEIQRLALFQEELDIIEELDD 48
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 479 SIVCLESFLASVFFECSSNSPINPGAYSLPSPSH 378
+I ES L + FF SN I+P + SL S +
Sbjct: 256 AIQAFESILQNTFFNGKSNPTIDPNSSSLLSEKY 289
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +3
Query: 513 IEPKDTSIVEKMNDKHSVLERLSRRDAQRLEKLQKAHKAREE 638
I K+ I N+K +RLS R Q L +L+K H+ EE
Sbjct: 743 ISQKEVEITSLRNEK----DRLSTRLQQVLLELEKQHETNEE 780
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,051
Number of Sequences: 5004
Number of extensions: 54622
Number of successful extensions: 161
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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