Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_G08
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1400 + 26779193-26779245,26779622-26779766,26779950-267810...    29   5.0  
03_05_0902 + 28643395-28643708,28643830-28643921,28644342-286444...    29   5.0  

>08_02_1400 +
           26779193-26779245,26779622-26779766,26779950-26781059,
           26781153-26781404,26782150-26782230,26782623-26782770,
           26782858-26783264,26783557-26783613
          Length = 750

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -1

Query: 452 ASVFFECSSNSPINPGAYSLPSPSHTFKSS*RVF 351
           +S  +ECSS  P+NP A   P+PS    SS R F
Sbjct: 55  SSRLYECSSTLPVNP-AEEAPTPSSRPVSSPRSF 87


>03_05_0902 +
           28643395-28643708,28643830-28643921,28644342-28644443,
           28645135-28645185,28645267-28645328,28645664-28645754,
           28645911-28645975,28646053-28646247,28646346-28646465,
           28646630-28646700,28646839-28647064,28647474-28647524,
           28647629-28647857,28648140-28648279,28648527-28648652
          Length = 644

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +3

Query: 630 REEVDACDENEDYFSGSFKIKSEYVEDLLAQ-VPTIDNSMLPSHFDIIKKEIXELQ 794
           R+E +  + + DY   + K+ +EY+  LL+Q +  +  + +PS   +I K I E++
Sbjct: 294 RKEKEYFESSPDYGHLAHKMGAEYLAKLLSQHLEAVIRAKIPSIIAMINKTIDEIE 349


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,609,466
Number of Sequences: 37544
Number of extensions: 300839
Number of successful extensions: 758
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)