Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_G06
         (1055 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132949-24|CAB61102.1|  860|Caenorhabditis elegans Hypothetical...    36   0.037
AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    35   0.085
U88308-9|AAB42325.1|  933|Caenorhabditis elegans Patched related...    34   0.15 
AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical ...    31   1.4  
AF039037-7|AAC48231.3|  441|Caenorhabditis elegans Nuclear hormo...    29   7.4  
U88182-2|AAB42308.4|  961|Caenorhabditis elegans Patched related...    28   9.7  

>AL132949-24|CAB61102.1|  860|Caenorhabditis elegans Hypothetical
           protein Y53F4B.28 protein.
          Length = 860

 Score = 36.3 bits (80), Expect = 0.037
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +2

Query: 329 LNRSFYKLGLAVGRQPGYFIIIPVLXTLLMVTGYXRIHYDMDPEYXFSPVSXQGKLXRTG 508
           L R F   G  V R+P +FI+IP L T+L   G+   H   D    ++P +   ++   G
Sbjct: 4   LERFFDWYGQFVARKPFFFILIPSLLTILSTYGFLSFHTQDDIWDIYAPTNGLSRVEEAG 63


>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 35.1 bits (77), Expect = 0.085
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +2

Query: 320 DDVLNRSFYKLGLAVGRQPGYFIIIPVLXTLLMVTGYXRIHYDMDPEYXFSP 475
           +D + + F+K G+ V +   +F+I+P+  T+L + G   +  ++D    F P
Sbjct: 11  EDWMQKVFFKYGIFVAKHQFWFLIVPLALTVLSIPGLFYLQINLDLYRLFVP 62


>U88308-9|AAB42325.1|  933|Caenorhabditis elegans Patched related
           family protein 2 protein.
          Length = 933

 Score = 34.3 bits (75), Expect = 0.15
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 341 FYKLGLAVGRQPGYFIIIPVLXTLLMVTGYXRIHYDMDPEYXFSPVSXQGKLXR 502
           F +LG  +   P  F + P+L T  M  G   ++   D  Y F+P+  Q K+ R
Sbjct: 14  FRQLGFLICDHPLPFFVFPLLFTAAMGVGLLHLNPLSDAVYLFTPLGAQSKMER 67


>AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical
           protein Y80D3A.7 protein.
          Length = 859

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 329 LNRSFYKLGLAVGRQPGYFIIIPVLXTLLMVTGYXRIHYDM 451
           + + FYK+G  VG  P   I + +L TL+   G+ R H  M
Sbjct: 12  MQKFFYKVGYFVGTHPRKCIGVLLLVTLVSCLGFLRFHQVM 52


>AF039037-7|AAC48231.3|  441|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 204 protein.
          Length = 441

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 350 VCRKTCSGHHXRLSVCNNPSSISARVALSRDVKYKSTXHN 231
           VC    +GHH  ++ CN   S   RV + + +KY+ +  N
Sbjct: 53  VCYGKATGHHYDVASCNGCKSFFRRVTIEK-LKYRCSAGN 91


>U88182-2|AAB42308.4|  961|Caenorhabditis elegans Patched related
           family protein 5 protein.
          Length = 961

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 329 LNRSFYKLGLAVGRQPGYFIIIPVLXTLLMVTGYXRIHYD 448
           L R FY +G +VGR P  ++I+  L ++  +  Y  +  D
Sbjct: 56  LRRMFYLVGYSVGRYPHAYLIVAFLISINSLGMYRMVLKD 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,772,274
Number of Sequences: 27780
Number of extensions: 211314
Number of successful extensions: 440
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2814342022
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)