Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_G03
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    29   0.87 
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    28   2.0  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    27   2.7  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    27   4.7  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   8.1  

>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 384 AKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVL 512
           AK  G   ++ VGG ++ E  EK + ++++  A  A ++ GVL
Sbjct: 402 AKLSGGIAVIKVGGSSEVEVNEKKDRIVDALNAVKAAVSEGVL 444


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = -1

Query: 719 LWIKXLFQFTNKGSETFTVLRFLLIDWRGAECLLNSMPKRSPGRADLLRLNSWELPGEVN 540
           +++K + +  + G    TVLRF   +   +  + N + + SPG   +L  NS E   E +
Sbjct: 5   VYLKHMRKLWSLGKVRSTVLRFSTTNRNASHLIKNELEQISPGIRQMLNSNS-EFLEECS 63

Query: 539 SIETILFSQQ 510
              TI   +Q
Sbjct: 64  KYYTIAQGKQ 73


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 487 LLSLIPECCWLNNMVSMELTSP 552
           L +L+PE  W NNM   EL +P
Sbjct: 227 LQALLPEVAWKNNMNQWELLNP 248


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -2

Query: 550 ARSIPSKPYC--SANSTPELMKAVRACCDSSRRLYFSGSSVSASPPTDNNTVRPG 392
           A S PS P    S +STP +  ++ +   +    Y   +SVS+ PP  ++ V PG
Sbjct: 277 ATSAPSVPSALSSISSTPFMKPSIPSTIPTIPSAY--SASVSSQPPLTHSYVHPG 329


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 523 CSANSTPELMKAVRACCDSSRRLYFSGS 440
           C  NST + M  V  C D   RLY  G+
Sbjct: 652 CEFNSTRKRMSIVFRCPDGKIRLYVKGA 679


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,996,844
Number of Sequences: 5004
Number of extensions: 54289
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)